Bibliography

347 publications disponibles

• Articles scientifiques
• Livres et monographies
• Parties d'ouvrages

Articles scientifiques

• Diallel panel reveals a significant impact of low-frequency genetic variants on gene expression variation in yeast, Molecular Systems Biology | 2024
  Auteur·e·s : Andreas Tsouris - Gauthier Brach - Anne Friedrich - Jing Hou - Joseph Schacherer
• Non-additive genetic components contribute significantly to population-wide gene expression variation, Cell Genomics | 2024
  Auteur·e·s : Andreas Tsouris - Gauthier Brach - Joseph Schacherer - Jing Hou
• Species-wide quantitative transcriptomes and proteomes reveal distinct genetic control of gene expression variation in yeast, Proceedings of the National Academy of Sciences | 2024
  Auteur·e·s : Elie Teyssonniere - Pauline Trébulle - Julia Muenzner - Victor Loegler - Daniela Ludwig - Fatma Amari - Michael Mülleder - Anne Friedrich - Jing Hou - Markus Ralser - Joseph Schacherer
• Species-wide survey of the expressivity and complexity spectrum of traits in yeast, PLOS Genetics | 2024
  Auteur·e·s : Andreas Tsouris - Téo Fournier - Anne Friedrich - Jing Hou - Maitreya J. Dunham - Joseph Schacherer
• Spontaneous dark fermentation in a pre-seeded liquid-gas membrane bioreactor: Impact of wine and coffee biowaste microflora on continuous biohydrogen production, Journal of Cleaner Production | 2024
  Auteur·e·s : Marie Renaudie - Christine Dumas - Stéphane Vuilleumier - Barbara Ernst
• Targeting of CRISPR-Cas12a crRNAs into human mitochondria, Biochimie | 2024
  Auteur·e·s : Natalia Nikitchina - Egor Ulashchik - Vadim Shmanai - Anne-Marie Heckel - Ivan Tarassov - Ilya Mazunin - Nina Entelis
• Valine aminoacyl-tRNA synthetase promotes therapy resistance in melanoma, Nature Cell Biology | 2024
  Auteur·e·s : Najla El-Hachem - Marine Leclercq - Miguel Susaeta Ruiz - Raphael Vanleyssem - Kateryna Shostak - Pierre-René Körner - Coralie Capron - Lorena Martin-Morales - Patrick Roncarati - Arnaud Lavergne - Arnaud Blomme - Silvia Turchetto - Eric Goffin - Palaniraja Thandapani - Ivan Tarassov - Laurent Nguyen - Bernard Pirotte - Alain Chariot - Jean-Christophe Marine - Michael Herfs - Francesca Rapino - Reuven Agami - Pierre Close
• Contrasting Genomic Evolution Between Domesticated and Wild Kluyveromyces lactis Yeast Populations, Genome Biology and Evolution | 2023
  Auteur·e·s : Anne Friedrich - Jean-Sebastien Gounot - Andreas Tsouris - Claudine Bleykasten - Kelle Freel - Claudia Caraded - Joseph Schacherer
• Controlled Level of Contamination Coupled to Deep Sequencing (CoLoC-seq) Probes the Global Localisation Topology of Organelle Transcriptomes, BIO-PROTOCOL | 2023
  Auteur·e·s : Anna Smirnova - Damien Jeandard - Alexander Smirnov
• GTPase Era at the heart of ribosome assembly, Frontiers in Molecular Biosciences | 2023
  Auteur·e·s : Christelle Gruffaz - Alexander Smirnov
• Lessons from the meiotic recombination landscape of the ZMM deficient budding yeast Lachancea waltii, PLOS Genetics | 2023
  Auteur·e·s : Fabien Dutreux - Abhishek Dutta - Emilien Peltier - Sabrina Bibi-triki - Anne Friedrich - Bertrand Llorente - Joseph Schacherer
• RNA target highlights in CASP15 : Evaluation of predicted models by structure providers, Proteins: Structure, Function, and Bioinformatics | 2023
  Auteur·e·s : Rachael C. Kretsch - Ebbe S. Andersen - Janusz M. Bujnicki - Wah Chiu - Rhiju Das - Bingnan Luo - Benoit Masquida - Ewan K. S. McRae - Griffin M. Schroeder - Zhaoming Su - Joseph E. Wedekind - Lily Xu - Kaiming Zhang - Ivan N. Zheludev - John Moult - Andriy Kryshtafovych
• A Methylotrophic Bacterium Growing with the Antidiabetic Drug Metformin as Its Sole Carbon, Nitrogen and Energy Source, Microorganisms | 2022
  Auteur·e·s : Pauline Chaignaud - Christelle Gruffaz - Adrien Borreca - Stéphanie Fouteau - Lauriane Kuhn - Jeremy Masbou - Zoé Rouy - Philippe Hammann - Gwenaël Imfeld - David Roche - Stéphane Vuilleumier
• A putatively new family of alphaproteobacterial chloromethane degraders from a deciduous forest soil revealed by stable isotope probing and metagenomics., Environmental microbiome | 2022
  Auteur·e·s : Eileen Kröber - Saranya Kanukollu - Sonja Wende - Françoise Bringel - Steffen Kolb - Ko2921/10-1
• CoLoC-seq probes the global topology of organelle transcriptomes, Nucleic Acids Research | 2022
  Auteur·e·s : Damien Jeandard - Anna Smirnova - Akinyemi Mandela Fasemore - Léna Coudray - Nina Entelis - Konrad U Förstner - Ivan Tarassov - Alexandre Smirnov
• Complete genome of Sphingomonas aerolata PDD-32b-11, isolated from cloud water at the summit of puy de Dôme, France, Microbiology Resource Announcements | 2022
  Auteur·e·s : Domitille Jarrige - Thierry Nadalig - Muriel Joly - Martine Sancelme - Stéphane Vuilleumier - Pierre Amato - Françoise Bringel
• Editorial: Role of mitochondria-associated non-coding RNAs in intracellular communication, Frontiers in Physiology | 2022
  Auteur·e·s : Veronica A. Burzio - Eric Barrey - Eleonora Leucci - Nina Entelis - John M. Hollander - Samarjit Das
• Extensive simulations assess the performance of genome-wide association mapping in various Saccharomyces cerevisiae subpopulations, Philosophical Transactions of the Royal Society B: Biological Sciences | 2022
  Auteur·e·s : Jackson Peter - Anne Friedrich - Gianni Liti - Joseph Schacherer
• Genome-wide transcription start sites mapping in Methylorubrum grown with dichloromethane and methanol, Microorganisms | 2022
  Auteur·e·s : Bruno Maucourt - David Roche - Pauline Chaignaud - Stéphane Vuilleumier - Françoise Bringel
• High quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water, G3 Genes|Genomes|Genetics | 2022
  Auteur·e·s : Domitille Jarrige - Sajeet Haridas - Claudine Bleykasten-Grosshans - Muriel Joly - Thierry Nadalig - Martine Sancelme - Stéphane Vuilleumier - Igor V Grigoriev - Pierre Amato - Françoise Bringel
• How global RNA-binding proteins coordinate the behaviour of RNA regulons: An information approach, Computational and Structural Biotechnology Journal | 2022
  Auteur·e·s : Alexander Smirnov
• Loss of Heterozygosity Spectrum Depends on Ploidy Level in Natural Yeast Populations, Molecular Biology and Evolution | 2022
  Auteur·e·s : Abhishek Dutta - Fabien Dutreux - Joseph Schacherer
• Loss of seryl-tRNA synthetase ( SARS1 ) causes complex spastic paraplegia and cellular senescence, Journal of Medical Genetics | 2022
  Auteur·e·s : Edgard Verdura - Bruno Senger - Miquel Raspall-Chaure - Agatha Schlüter - Nathalie Launay - Montserrat Ruiz - Carlos Casasnovas - Agustí Rodriguez-Palmero - Alfons Macaya - Hubert Becker - Aurora Pujol
• Loss-of-function mutation survey revealed that genes with background-dependent fitness are rare and functionally related in yeast, Proceedings of the National Academy of Sciences | 2022
  Auteur·e·s : Elodie Caudal - Anne Friedrich - Arthur Jallet - Marion Garin - Jing Hou - Joseph Schacherer
• New way of valorization of raw coffee silverskin: biohydrogen and acetate production by dark fermentation without exogenous inoculum, Bioresource Technology Reports | 2022
  Auteur·e·s : Marie Renaudie - Christine Dumas - Stéphane Vuilleumier - Barbara Ernst
• RNA-dependent synthesis of ergosteryl-3β-O-glycine in Ascomycota expands the diversity of steryl-amino acids, Journal of Biological Chemistry | 2022
  Auteur·e·s : Nathaniel Yakobov - Nassira Mahmoudi - Guillaume Grob - Daisuke Yokokawa - Yusuke Saga - Tetsuo Kushiro - Danielle Worrell - Hervé Roy - Hubert Schaller - Bruno Senger - Laurence Huck - Gisela Reina Gascon - Hubert Becker - Frédéric Fischer
• Towards accurate, contiguous and complete alignment-based polyploid phasing algorithms, Genomics | 2022
  Auteur·e·s : Omar Abou-Saada - Anne Friedrich - Joseph Schacherer
• 13C ‐chloromethane incubations provide evidence for novel bacterial chloromethane degraders in a living tree fern, Environmental Microbiology | 2021
  Auteur·e·s : Eileen Kröber - Sonja Wende - Saranya Kanukollu - Caroline Buchen‐Tschiskale - Ludovic Besaury - Frank Keppler - Stéphane Vuilleumier - Steffen Kolb - Françoise Bringel
• A Homozygous Missense Variant in PPP1R1B/DARPP‐32 Is Associated With Generalized Complex Dystonia, Movement Disorders | 2021
  Auteur·e·s : Amjad Khan - Anne Molitor - Sylvain Mayeur - Gaoqun Zhang - Bruno Rinaldi - Béatrice Lannes - Benoît Lhermitte - Muhammad Umair - Stefan T. Arold - Sylvie Friant - Sepand Rastegar - Mathieu Anheim - Seiamak Bahram - Raphaël Carapito
• A Versatile Solid-Phase Approach to the Synthesis of Oligonucleotide Conjugates with Biodegradable Hydrazone Linker, Molecules | 2021
  Auteur·e·s : Mariya Meschaninova - Nina Entelis - Elena Chernolovskaya - Alya Venyaminova
• A novel mode of control of nickel uptake by a multifunctional metallochaperone, PLoS Pathogens | 2021
  Auteur·e·s : Milica Denic - Evelyne Turlin - Valérie Michel - Frédéric Fischer - Mozhgan Khorasani-Motlagh - Deborah Zamble - Daniel Vinella - Hilde de Reuse
• Biohydrogen production in a continuous liquid/gas hollow fiber membrane bioreactor: Efficient retention of hydrogen producing bacteria via granule and biofilm formation, Bioresource Technology | 2021
  Auteur·e·s : Marie Renaudie - Christine Dumas - Stéphane Vuilleumier - Barbara Ernst
• Cex1 is a component of the COPI intracellular trafficking machinery, Biology Open | 2021
  Auteur·e·s : Ludovic Enkler - Bruno Rinaldi - Johan Owen de Craene - Philippe Hammann - Osamu Nureki - Bruno Senger - Sylvie Friant - Hubert Becker
• Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies, Frontiers in Genetics | 2021
  Auteur·e·s : Susana Martínez Arbas - Susheel Bhanu Busi - Pedro Queirós - Laura de Nies - Malte Herold - Patrick May - Paul Wilmes - Emilie Muller - Shaman Narayanasamy
• Characterisation of hydrocarbon degradation, biosurfactant production, and biofilm formation in Serratia sp. Tan611: a new strain isolated from industrially contaminated environment in Algeria, Antonie van Leeuwenhoek | 2021
  Auteur·e·s : Annela Semai - Frederic Plewniak - Armelle Charrié-Duhaut - Amalia Sayeh - Lisa Gil - Céline Vandecasteele - Céline Lopez-Roques - Emmanuelle Leize-Wagner - Farid Bensalah - Philippe Bertin
• Chlorinated ethene biodegradation and associated bacterial taxa in multi-polluted groundwater: Insights from biomolecular markers and stable isotope analysis, Science of the Total Environment | 2021
  Auteur·e·s : Jennifer Hellal - Catherine Joulian - Charlotte Urien - Stéphanie Ferreira - Jérémie Denonfoux - Louis Hermon - Stéphane Vuilleumier - Gwenael Imfeld
• Different trajectories of polyploidization shape the genomic landscape of the Brettanomyces bruxellensis yeast species, Genome Research | 2021
  Auteur·e·s : Chris Eberlein - Omar Abou-Saada - Anne Friedrich - Warren Albertin - Joseph Schacherer
• Dissection of quantitative trait loci in the Lachancea waltii yeast species highlights major hotspots, G3 | 2021
  Auteur·e·s : Emilien Peltier - Sabrina Bibi-triki - Fabien Dutreux - Claudia Caradec - Anne Friedrich - Bertrand Llorente - Joseph Schacherer
• Efficient target cleavage by Type V Cas12a effectors programmed with split CRISPR RNA, Nucleic Acids Research | 2021
  Auteur·e·s : Regina Shebanova - Natalia Nikitchina - Nikita Shebanov - Vladimir Mekler - Konstantin Kuznedelov - Egor Ulashchik - Ruslan Vasilev - Olga Sharko - Vadim Shmanai - Ivan Tarassov - Konstantin Severinov - Nina Entelis - Ilya Mazunin
• Evidence for Two Main Domestication Trajectories in Saccharomyces cerevisiae Linked to Distinct Bread-Making Processes, Current biology: CB | 2021
  Auteur·e·s : Frédéric Bigey - Diego Segond - Anne Friedrich - Stephane Guezenec - Aurélie Bourgais - Lucie Huyghe - Nicolas Agier - Thibault Nidelet - Delphine Sicard
• Flor Yeasts Rewire the Central Carbon Metabolism During Wine Alcoholic Fermentation, Frontiers in Fungal Biology | 2021
  Auteur·e·s : Emilien Peltier - Charlotte Vion - Omar Abou-Saada - Anne Friedrich - Joseph Schacherer - Philippe Marullo
• Genetic evolution of a multi-generational population in the context of interstellar space travels -- Part I: Genetic evolution under the neutral selection hypothesis, Journal of British Interplanetary Society | 2021
  Auteur·e·s : Camille Beluffi - Frédéric Marin - Frédéric Fischer
• Intensification and optimization of continuous hydrogen production by dark fermentation in a new design liquid/gas hollow fiber membrane bioreactor, Chemical Engineering Journal | 2021
  Auteur·e·s : Marie Renaudie - Valentin Clion - Christine Dumas - Stéphane Vuilleumier - Barbara Ernst
• Loss of heterozygosity results in rapid but variable genome homogenization across yeast genetic backgrounds, eLife | 2021
  Auteur·e·s : Abhishek Dutta - Fabien Dutreux - Joseph Schacherer
• Metatranscriptomic outlook on green and brown food webs in acid mine drainage, Environmental Microbiology Reports | 2021
  Auteur·e·s : Frederic Plewniak - Simona Crognale - Odile Bruneel - Odile Sismeiro - Jean-Yves Coppée - Simona Rossetti - Philippe Bertin
• Progress toward SHAPE Constrained Computational Prediction of Tertiary Interactions in RNA Structure, Non-Coding RNA | 2021
  Auteur·e·s : Grégoire De Bisschop - Delphine Allouche - Elisa Frezza - Benoit Masquida - Yann Ponty - Sebastian Will - Bruno Sargueil
• Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics, Nature Microbiology | 2021
  Auteur·e·s : S Martínez Arbas - S Narayanasamy - M Herold - L Lebrun - M Hoopmann - S Li - T Lam - B Kunath - N Hicks - C Liu - L Price - C Laczny - J Gillece - J Schupp - P Keim - R Moritz - K Faust - H Tang - Y Ye - A Skupin - P May - Emilie Muller - P Wilmes
• Sex without crossing over in the yeast Saccharomycodes ludwigii, Genome Biology | 2021
  Auteur·e·s : Ioannis A. Papaioannou - Fabien Dutreux - France Peltier - Hiromi Maekawa - Nicolas Delhomme - Amit Bardhan - Anne Friedrich - Joseph Schacherer - Michael Knop
• Species-Wide Transposable Element Repertoires Retrace the Evolutionary History of the Saccharomyces cerevisiae Host, Molecular Biology and Evolution | 2021
  Auteur·e·s : Claudine Bleykasten-grosshans - Romeo Fabrizio - Anne Friedrich - Joseph Schacherer
• Synthesis of aminoacylated ergosterols: A new lipid component of fungi, Steroids | 2021
  Auteur·e·s : Daisuke Yokokawa - Shunsuke Tatematsu - Ryoka Takagi - Yusuke Saga - Hervé Roy - Frédéric Fischer - Hubert Becker - Tetsuo Kushiro
• The World of Stable Ribonucleoproteins and Its Mapping With Grad-Seq and Related Approaches, Frontiers in Molecular Biosciences | 2021
  Auteur·e·s : Milan Gerovac - Jörg Vogel - Alexander Smirnov
• Water and soil contaminated by arsenic: the use of microorganisms and plants in bioremediation, Environmental Science and Pollution Research | 2021
  Auteur·e·s : Philippe Bertin - Simona Crognale - Frederic Plewniak - Fabienne Battaglia-Brunet - Simona Rossetti - Michel Mench
• Water table fluctuations affect dichloromethane biodegradation in lab-scale aquifers contaminated with organohalides, Water Research | 2021
  Auteur·e·s : Maria Prieto Espinoza - Sylvain Weill - Benjamin Belfort - Emilie Muller - Jérémy Masbou - François Lehmann - Stéphane Vuilleumier - Gwenaël Imfeld
• YbeY, eminence grise of ribosome biogenesis, Biochemical Society Transactions | 2021
  Auteur·e·s : Zhen Liao - Cédric Schelcher - Alexander Smirnov
• nPhase: an accurate and contiguous phasing method for polyploids, Genome Biology | 2021
  Auteur·e·s : Omar Abou-Saada - Andreas Tsouris - Chris Eberlein - Anne Friedrich - Joseph Schacherer
• A yeast living ancestor reveals the origin of genomic introgressions, Nature | 2020
  Auteur·e·s : Melania D'Angiolo - Matteo De Chiara - Jia-Xing Yue - Agurtzane Irizar - Simon Stenberg - Karl Persson - Agnès Llored - Benjamin Barré - Joseph Schacherer - Roberto Marangoni - Eric Gilson - Jonas Warringer - Gianni Liti
• Assigning mitochondrial localization of dual localized proteins using a yeast Bi-Genomic Mitochondrial-Split-GFP, eLife | 2020
  Auteur·e·s : Gaëtan Bader - Ludovic Enkler - Yuhei Araiso - Marine Hemmerle - Krystyna Binko - Emilia Baranowska - Johan-Owen De Craene - Julie Ruer-Laventie - Jean Pieters - Déborah Tribouillard-Tanvier - Bruno Senger - Jean-Paul di Rago - Sylvie Friant - Roza Kucharczyk - Hubert Becker
• Biallelic PDE2A variants: a new cause of syndromic paroxysmal dyskinesia, European Journal of Human Genetics | 2020
  Auteur·e·s : Diane Doummar - Christel Dentel - Romane Lyautey - Julia Metreau - Boris Keren - Nathalie Drouot - Ludivine Malherbe - Viviane Bouilleret - Jeremie Courraud - Maria Paola Valenti-Hirsch - Lorella Minotti - Blandine Dozieres-Puyravel - Severine Bar - Julia Scholly - Elise Schaefer - Caroline Nava - Thomas Wirth - Hala Nasser - Marie de Salins - Anne de Saint Martin - Marie Thérèse Abi Warde - Philippe Kahane - Edouard Hirsch - Mathieu Anheim - Sylvie Friant - Jameleddine Chelly - Cyril Mignot - Gabrielle Rudolf
• CRISpy-Pop | 2020
  Auteur·e·s : Hayley Stoneman - Russell Wrobel - Michael Place - Michael Graham - David Krause - Matteo De Chiara - Gianni Liti - Joseph Schacherer - Robert Landick - Audrey Gasch - Trey Sato - Chris Hittinger
• Chlorine Isotope Fractionation of the Major Chloromethane Degradation Processes in the Environment, Environmental Science & Technology | 2020
  Auteur·e·s : Frank Keppler - Jaime D. Barnes - Axel Horst - Enno Bahlmann - Jing Luo - Thierry Nadalig - Markus Greule - S. Christoph Hartmann - Stéphane Vuilleumier
• De Novo and Bi-allelic Pathogenic Variants in NARS1 Cause Neurodevelopmental Delay Due to Toxic Gain-of-Function and Partial Loss-of-Function Effects, American Journal of Human Genetics | 2020
  Auteur·e·s : Andreea Manole - Stephanie Efthymiou - Emer O’Connor - Marisa I. Mendes - Matthew Jennings - Reza Maroofian - Indran Davagnanam - Kshitij Mankad - Maria Rodriguez Lopez - Vincenzo Salpietro - Ricardo Harripaul - Lauren Badalato - Jagdeep Walia - Christopher S. Francklyn - Alkyoni Athanasiou-Fragkouli - Roisin Sullivan - Sonal Desai - Kristin Baranano - Faisal Zafar - Nuzhat Rana - Muhammed Ilyas - Alejandro Horga - Majdi Kara - Francesca Mattioli - Alice Goldenberg - Helen Griffin - Amélie Piton - Lindsay B. Henderson - Benyekhlef Kara - Ayca Dilruba Aslanger - Joost Raaphorst - Rolph Pfundt - Ruben Portier - Marwan Shinawi - Amelia Kirby - Katherine M. Christensen - Lu Wang - Rasim O. Rosti - Sohail A. Paracha - Muhammad T. Sarwar - Dagan Jenkins - Jawad Ahmed - Federico A. Santoni - Emmanuelle Ranza - Justyna Iwaszkiewicz - Cheryl Cytrynbaum - Rosanna Weksberg - Ingrid M. Wentzensen - Maria J. Guillen Sacoto - Yue Si - Aida Telegrafi - Marisa V. Andrews - Dustin Baldridge - Heinz Gabriel - Julia Mohr - Barbara Oehl-Jaschkowitz - Sylvain Debard - Bruno Senger - Frédéric Fischer - Conny van Ravenwaaij - Annemarie J.M. Fock - Servi J.C. Stevens - Jürg Bähler - Amina Nasar - John F. Mantovani - Adnan Manzur - Anna Sarkozy - Desirée E.C. Smith - Gajja S. Salomons - Zubair M. Ahmed - Shaikh Riazuddin - Saima Riazuddin - Muhammad A. Usmani - Annette Seibt - Muhammad Ansar - Stylianos E. Antonarakis - John B. Vincent - Muhammad Ayub - Mona Grimmel - Anne Marie Jelsig - Tina Duelund Hjortshøj - Helena Gásdal Karstensen - Marybeth Hummel - Tobias B. Haack - Yalda Jamshidi - Felix Distelmaier - Rita Horvath - Joseph G. Gleeson - Hubert Becker - Jean-Louis Mandel - David A. Koolen - Henry Houlden
• Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics, Microorganisms | 2020
  Auteur·e·s : Karim Hayoun - Emilie Geersens - Cédric Laczny - Rashi Halder - Carmen Lázaro Sánchez - Abhijit Manna - Françoise Bringel - Michaël Ryckelynck - Paul Wilmes - Emilie Muller - Béatrice Alpha-Bazin - Jean Armengaud - Stéphane Vuilleumier
• Discordant evolution of mitochondrial and nuclear yeast genomes at population level, BMC biology | 2020
  Auteur·e·s : Matteo De Chiara - Anne Friedrich - Benjamin Barré - Michael Breitenbach - Joseph Schacherer - Gianni Liti
• Dissipation of S-metolachlor and butachlor in agricultural soils and responses of bacterial communities: Insights from compound-specific isotope and biomolecular analyses, Journal of Environmental Sciences | 2020
  Auteur·e·s : Ehssan Torabi - Charline Wiegert - Benoit Guyot - Stéphane Vuilleumier - Gwenael Imfeld
• High Complexity and Degree of Genetic Variation in Brettanomyces bruxellensis Population, Genome Biology and Evolution | 2020
  Auteur·e·s : Jean-Sébastien Gounot - Cécile Neuvéglise - Kelle Freel - Hugo Devillers - Jure Piškur - Anne Friedrich - Joseph Schacherer
• Homoplasmic mitochondrial tRNA Pro mutation causing exercise-induced muscle swelling and fatigue, Neurology Genetics | 2020
  Auteur·e·s : Karine Auré - Guillemette Fayet - Ivan Chicherin - Benoit Rucheton - Sandrine Filaut - Anne Marie Heckel - Julie Eichler - Florence Caillon - Yann Péréon - Nina Entélis - Ivan Tarassov - Anne Lombès
• Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance, Nature Communications | 2020
  Auteur·e·s : Malte Herold - Susana Martínez Arbas - Shaman Narayanasamy - Abdul R. Sheik - Luise A. K. Kleine-Borgmann - Laura A. Lebrun - Benoît J. Kunath - Hugo Roume - Irina Bessarab - Rohan B. H. Williams - John D. Gillece - James M. Schupp - Paul S. Keim - Christian Jäger - Michael R. Hoopmann - Robert L. Moritz - Yuzhen Ye - Sujun Li - Haixu Tang - Anna Heintz-Buschart - Patrick May - Emilie Muller - Cedric C. Laczny - Paul Wilmes
• Pervasive Phenotypic Impact of a Large Nonrecombining Introgressed Region in Yeast, Molecular Biology and Evolution | 2020
  Auteur·e·s : Christian Brion - Claudia Caradec - David Pflieger - Anne Friedrich - Joseph Schacherer
• Proteasome subunit PSMC3 variants cause neurosensory syndrome combining deafness and cataract due to proteotoxic stress, EMBO Molecular Medicine | 2020
  Auteur·e·s : Ariane Kroll-hermi - Frédéric Ebstein - Corinne Stoetzel - Véronique Geoffroy - Elise Schaefer - Sophie Scheidecker - Severine Bar - Masanari Takamiya - Koichi Kawakami - Barbara A Zieba - Fouzia Studer - Valerie Pelletier - Carine Eyermann - Claude Speeg‐Schatz - Vincent Laugel - Dan Lipsker - Florian Sandron - Steven McGinn - Anne Boland - Jean‐François Deleuze - Lauriane Kuhn - Johana Chicher - Philippe Hammann - Sylvie Friant - Christelle Etard - Elke Krüger - Jean Muller - Uwe Strähle - Hélène Dollfus
• RNA-dependent sterol aspartylation in fungi, Proceedings of the National Academy of Sciences | 2020
  Auteur·e·s : Nathaniel Yakobov - Frédéric Fischer - Nassira Mahmoudi-kaidi - Yusuke Saga - Christopher D. Grube - Hervé Roy - Bruno Senger - Guillaume Grob - Shunsuke Tatematsu - Daisuke Yokokawa - Isabelle Mouyna - Jean-Paul Latgé - Harushi Nakajima - Tetsuo Kushiro - Hubert Becker
• Staphylococcus aureus Panton‐Valentine Leukocidin triggers an alternative NETosis process targeting mitochondria, The FASEB Journal | 2020
  Auteur·e·s : Viola Mazzoleni - Gaëlle Zimmermann - Meisse - Anna Smirnova - Ivan Tarassov - Gilles Prevost
• Transcriptional regulation of organohalide pollutant utilisation in bacteria, FEMS Microbiology Reviews | 2020
  Auteur·e·s : Bruno Maucourt - Stéphane Vuilleumier - Françoise Bringel
• YBEY is an essential biogenesis factor for mitochondrial ribosomes, Nucleic Acids Research | 2020
  Auteur·e·s : Sabrina Summer - Anna Smirnova - Alessandro Gabriele - Ursula Toth - Akinyemi Mandela Fasemore - Konrad U Förstner - Lauriane Kuhn - Johana Chicher - Philippe Hammann - Goran Mitulović - Nina Entelis - Ivan Tarassov - Walter Rossmanith - Alexander Smirnov
• Yeast as a Model to Understand Actin-Mediated Cellular Functions in Mammals—Illustrated with Four Actin Cytoskeleton Proteins, Cells | 2020
  Auteur·e·s : Zain Akram - Ishtiaq Ahmed - Heike Mack - Ramandeep Kaur - Richard C. Silva - Beatriz A. Castilho - Sylvie Friant - Evelyn Sattlegger - Alan L. Munn
• 40 Years of Studying RNA Import into Mitochondria: From Basic Mechanisms to Gene Therapy Strategies, Molecular Biology | 2019
  Auteur·e·s : P. A. Kamenski - I. A. Krasheninnikov - Ivan Tarassov
• A New SLC10A7 Homozygous Missense Mutation Responsible for a Milder Phenotype of Skeletal Dysplasia With Amelogenesis Imperfecta, Frontiers in Genetics | 2019
  Auteur·e·s : Virginie Laugel-Haushalter - Séverine Bar - Elise Schaefer - Corinne Stoetzel - Véronique Geoffroy - Yves Alembik - Naji Kharouf - Mathilde Huckert - Pauline Hamm - Joseph Hemmerlé - Marie-Cécile Maniere - Sylvie Friant - Hélène Dollfus - Agnès Bloch-Zupan
• André Goffeau's imprinting on second generation yeast "genomologists", Yeast | 2019
  Auteur·e·s : Cécile Fairhead - Gilles Fischer - Gianni Liti - Cécile Neuvéglise - Joseph Schacherer
• Conformational adaptation of UNCG loops upon crowding, RNA | 2019
  Auteur·e·s : Melanie Meyer - Hélène Walbott - Vincent Oliéric - Jiro Kondo - Maria Costa - Benoit Masquida
• Determining microbial niche breadth in the environment for better ecosystem fate predictions, mSystems | 2019
  Auteur·e·s : Emilie Muller
• Extensive impact of low-frequency variants on the phenotypic landscape at population-scale, eLife | 2019
  Auteur·e·s : Téo Fournier - Omar Abou-Saada - Jing Hou - Jackson Peter - Elodie Caudal - Joseph Schacherer
• Functional Genes and Bacterial Communities During Organohalide Respiration of Chloroethenes in Microcosms of Multi-Contaminated Groundwater, Frontiers in Microbiology | 2019
  Auteur·e·s : Louis Hermon - Jennifer Hellal - Jérémie Denonfoux - Stéphane Vuilleumier - Gwenael Imfeld - Charlotte Urien - Stéphanie Ferreira - Catherine Joulian
• Import of Non-Coding RNAs into Human Mitochondria: A Critical Review and Emerging Approaches, Cells | 2019
  Auteur·e·s : Damien Jeandard - Anna Smirnova - Ivan Tarassov - Eric Barrey - Alexander Smirnov - Nina Entelis
• In situ metabolic activities of uncultivated Ferrovum sp. CARN8 evidenced by metatranscriptomic analysis, Research in Microbiology | 2019
  Auteur·e·s : Frederic Plewniak - Sandrine Koechler - Denis Le Paslier - Marina Héry - Odile Bruneel - Philippe Bertin
• Individual stages of bacterial dichloromethane degradation mapped by carbon and chlorine stable isotope analysis, Journal of Environmental Sciences | 2019
  Auteur·e·s : Maria L. Torgonskaya - Anatoly M. Zyakun - Yuri A. Trotsenko - Kestutis S. Laurinavichius - Steffen Kummel - Stéphane Vuilleumier - Hans H. Richnow
• Isolation, characterization, and multiple heavy metal-resistant and hexavalent chromium-reducing Microbacterium testaceum B-HS2 from tannery effluent, Journal of King Saud University - Science | 2019
  Auteur·e·s : Amina Elahi - Mehvish Ajaz - Abdul Rehman - Stéphane Vuilleumier - Zaman Khan - Syed Zajif Hussain
• Methylotrophs and methylotroph populations for chloromethane degradation, Current Issues in Molecular Biology | 2019
  Auteur·e·s : Françoise Bringel - Ludovic Besaury - Pierre Amato - Eileen Kröber - Steffen Kolb - Frank Keppler - Stéphane Vuilleumier - Thierry Nadalig
• Microorganisms and metals: a love-hate relationship?, Research in Microbiology | 2019
  Auteur·e·s : Philippe Bertin
• Mutations in KARS cause a severe neurological and neurosensory disease with optic neuropathy, Human Mutation | 2019
  Auteur·e·s : Sophie Scheidecker - Severine Bar - Corinne Stoetzel - Véronique Geoffroy - Béatrice Lannes - Bruno Rinaldi - Frédéric Fischer - Hubert Becker - Valérie Pelletier - Cécile Pagan - Cécile Acquaviva‐Bourdain - Stéphane Kremer - Marc Mirande - Christine Tranchant - Jean Muller - Sylvie Friant - Hélène Dollfus
• Natural Chlordecone Degradation Revealed by Numerous Transformation Products Characterized in Key French West Indies Environmental Compartments, Environmental Science and Technology | 2019
  Auteur·e·s : Marion L. Chevallier - Oriane Della-Negra - Sébastien Chaussonnerie - Agnès Barbance - Delphine Muselet - Florian Lagarde - Ekaterina Darii - Edgardo Ugarte - Ewen Lescop - Nuria Fonknechten - Jean Weissenbach - Thierry Woignier - Jean-François Gallard - Stéphane Vuilleumier - Gwenaël Imfeld - Denis Le Paslier - Pierre-Loïc Saaidi
• Quantitative Trait Nucleotides Impacting the Technological Performances of Industrial Saccharomyces cerevisiae Strains, Frontiers in Genetics | 2019
  Auteur·e·s : Emilien Peltier - Anne Friedrich - Joseph Schacherer - Philippe Marullo
• RNAi as a Tool to Study Virulence in the Pathogenic Yeast Candida glabrata, Frontiers in Microbiology | 2019
  Auteur·e·s : Olena P. Ishchuk - Khadija Mohamed Ahmad - Katarina Koruza - Klara Bojanovič - Marcel Sprenger - Lydia Kasper - Sascha Brunke - Bernhard Hube - Torbjörn Säll - Thomas Hellmark - Birgitta Gullstrand - Christian Brion - Kelle Freel - Joseph Schacherer - Birgitte Regenberg - Wolfgang Knecht - Jure Piškur
• Recessive PYROXD1 mutations cause adult-onset limb-girdle-type muscular dystrophy, Journal of Neurology | 2019
  Auteur·e·s : Markus T. Sainio - Salla Välipakka - Bruno Rinaldi - Helena Lapatto - Anders Paetau - Simo Ojanen - Virginia Brilhante - Manu Jokela - Sanna Huovinen - Mari Auranen - Johanna Palmio - Sylvie Friant - Emil Ylikallio - Bjarne Udd - Henna Tyynismaa
• Reshuffling yeast chromosomes with CRISPR/Cas9, PLoS Genetics | 2019
  Auteur·e·s : Aubin Fleiss - Samuel O'Donnell - Téo Fournier - Wenqing Lu - Nicolas Agier - Stéphane Delmas - Joseph Schacherer - Gilles Fischer
• The induction of HAD-like phosphatases by multiple signaling pathways confers resistance to the metabolic inhibitor 2-deoxyglucose, Science Signaling | 2019
  Auteur·e·s : Quentin Defenouillère - Agathe Verraes - Clotilde Laussel - Anne Friedrich - Joseph Schacherer - Sébastien Léon
• A genomic outlook on bioremediation: the case of arsenic removal, Frontiers in Microbiology | 2018
  Auteur·e·s : Frederic Plewniak - Simona Crognale - Simona Rossetti - Philippe Bertin
• A year of monitoring 20 mesophilic full-scale bioreactors reveals the existence of stable but different core microbiomes in bio-waste and wastewater anaerobic digestion systems, Biotechnology for Biofuels and Bioproducts | 2018
  Auteur·e·s : M Calusinska - X Goux - M Fossepre - Emilie Muller - P Wilmes - P Delfosse
• Anti-replicative recombinant 5S rRNA molecules can modulate the mtDNA heteroplasmy in a glucose-dependent manner, PLOS ONE | 2018
  Auteur·e·s : Romuald Loutre - Anne-Marie Heckel - Damien Jeandard - Ivan Tarassov - Nina Entelis - Johannes N. Spelbrink
• Brettanomyces bruxellensis population survey reveals a diploid-triploid complex structured according to substrate of isolation and geographical distribution, Scientific Reports | 2018
  Auteur·e·s : Marta Avramova - Alice Cibrario - Emilien Peltier - Monika Coton - Emmanuel Coton - Joseph Schacherer - Giuseppe Spano - Vittorio Capozzi - Giuseppe Blaiotta - Franck Salin - Marguerite Dols-Lafargue - Paul Grbin - Chris Curtin - Warren Albertin - Isabelle Masneuf-Pomarede
• Can Mitochondrial DNA be CRISPRized: Pro and Contra, IUBMB Life | 2018
  Auteur·e·s : Romuald Loutre - Anne-Marie Heckel - Anna Smirnova - Nina Entelis - Ivan Tarassov
• Cex1 is a new component of the COPIb trans-Golgi-to-vacuole intracellular trafficking machinery, BioRxiv | 2018
  Auteur·e·s : Ludovic Enkler - O.J. De Craene - Bruno Rinaldi - Philippe Hammann - Osamu Nureki - Bruno Senger - Sylvie Friant - Hubert Becker
• Chloromethane Degradation in Soils: A Combined Microbial and Two-Dimensional Stable Isotope Approach, Journal of Environmental Quality | 2018
  Auteur·e·s : Nicole Jaeger - Ludovic Besaury - Eileen Kröber - Anne-Marie Delort - Markus Greule - Katharina Lenhart - Thierry Nadalig - Stéphane Vuilleumier - Pierre Amato - Steffen Kolb - Françoise Bringel - Frank Keppler
• Chloromethane formation and degradation in the fern phyllosphere, Science of The Total Environment | 2018
  Auteur·e·s : Nicole Jaeger - Ludovic Besaury - Amelie Ninja Röhling - Fabien Koch - Anne-Marie Delort - Cyrielle Gasc - Markus Greule - Steffen Kolb - Thierry Nadalig - Pierre Peyret - Stéphane Vuilleumier - Pierre Amato - Françoise Bringel - Frank Keppler
• Cytosolic aminoacyl-tRNA synthetases: Unanticipated relocations for unexpected functions, Biochimica et Biophysica Acta Molecular and Cell Biology of Lipids | 2018
  Auteur·e·s : Nathaniel Yakobov - Sylvain Debard - Frédéric Fischer - Bruno Senger - Hubert Becker
• Dichloromethane biodegradation in multi-contaminated groundwater: Insights from biomolecular and compound-specific isotope analyses, Water Research | 2018
  Auteur·e·s : Louis Hermon - J. Denonfoux - J. Hellal - C. Joulian - S. Ferreira - Stéphane Vuilleumier - Gwenael Imfeld
• Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics, Scientific Reports | 2018
  Auteur·e·s : M Chaib De Mares - D Jimenez - G Palladino - J Gutleben - L Lebrun - Emilie Muller - P Wilmes - D Sipkema - J van Elsas
• Genome evolution across 1,011 Saccharomyces cerevisiae isolates, Nature | 2018
  Auteur·e·s : Jackson Peter - Matteo De Chiara - Anne Friedrich - Jia-Xing Yue - David Pflieger - Anders Bergström - Anastasie Sigwalt - Benjamin Barre - Kelle Freel - Agnès Llored - Corinne Cruaud - Karine Labadie - Jean-Marc Aury - Benjamin Istace - Kevin Lebrigand - Pascal Barbry - Stefan Engelen - Arnaud Lemainque - Patrick Wincker - Gianni Liti - Joseph Schacherer
• Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C, Yeast | 2018
  Auteur·e·s : Caiti Smukowski Heil - Joshua N. Burton - Ivan Liachko - Anne Friedrich - Noah A. Hanson - Cody L. Morris - Joseph Schacherer - Jay Shendure - James H. Thomas - Maitreya J. Dunham
• Incompatibilities in Mismatch Repair Genes MLH1-PMS1 Contribute to a Wide Range of Mutation Rates in Human Isolates of Baker's Yeast, Genetics | 2018
  Auteur·e·s : Vandana Raghavan - Duyen T. Bui - Najla Al-Sweel - Anne Friedrich - Joseph Schacherer - Charles F. Aquadro - Eric Alani
• Methanol consumption drives the bacterial chloromethane sink in a forest soil, ISME Journal | 2018
  Auteur·e·s : Pauline Chaignaud - Mareen Morawe - Ludovic Besaury - Eileen Kröber - Stéphane Vuilleumier - Françoise Bringel - Steffen Kolb
• Plant-Pesticide Interactions and the Global Chloromethane Budget, Trends in Plant Science | 2018
  Auteur·e·s : Françoise Bringel - Ivan Couée
• Using metabolic networks to resolve ecological properties of microbiomes, Current Opinion in Systems Biology | 2018
  Auteur·e·s : Emilie Muller - K Faust - S Widder - M Herold - S Martínez Arbas - P Wilmes
• Whole-genome sequencing in patients with ciliopathies uncovers a novel recurrent tandem duplication in IFT140, Human Mutation | 2018
  Auteur·e·s : Véronique Geoffroy - Corinne Stoetzel - Sophie Scheidecker - Elise Schaefer - Isabelle Perrault - Séverine Bär - Ariane Kröll - Marion Delbarre - Manuela Antin - Anne-Sophie Leuvrey - Charline Henry - Hélène Blanché - Eva Decker - Katja Kloth - Günter Klaus - Christoph Mache - Dominique Martin-Coignard - Steven McGinn - Anne Boland - Jean-François Deleuze - Sylvie Friant - Sophie Saunier - Jean-Michel Rozet - Carsten Bergmann - Hélène Dollfus - Jean Muller
• An Ancient Pseudoknot in TNF-α Pre-mRNA Activates PKR, Inducing eIF2α Phosphorylation that Potently Enhances Splicing, Cell Reports | 2017
  Auteur·e·s : Lise Sarah Namer - Farhat Osman - Yona Banai - Benoit Masquida - Rodrigo Jung - Raymond Kaempfer
• Bacterial Community Composition and Genes for Herbicide Degradation in a Stormwater Wetland Collecting Herbicide Runoff, Water Air Soil Pollut | 2017
  Auteur·e·s : Florian Mauffrey - Pierre-Yves Baccara - Christelle Gruffaz - Stéphane Vuilleumier - Gwenael Imfeld
• Correlated production and consumption of chloromethane in the Arabidopsis thaliana phyllosphere, Scientific Reports | 2017
  Auteur·e·s : Muhammad Farhan Ul Haque - Ludovic Besaury - Thierry Nadalig - Françoise Bringel - Jerome Mutterer - Hubert Schaller - Stéphane Vuilleumier
• Discovery of new RNA classes and global RNA-binding proteins, Current Opinion in Microbiology | 2017
  Auteur·e·s : Alexander Smirnov - Cornelius Schneider - Jens Hör - Jörg Vogel
• Draft genome sequences of two gammaproteobacterial methanotrophs isolated from rice ecosystems, Genome Announcements | 2017
  Auteur·e·s : Katharina Frindte - Marina Kalyuzhnaya - Françoise Bringel - Peter Dunfield - Mike Jetten - Valentina Khmelenina - Martin Klotz - J Murrell - Huub Op den Camp - Yasuyoshi Sakai - Jeremy Semrau - Nicole Shapiro - Alan Dispirito - Lisa Stein - Mette Svenning - Yuri Trotsenko - Stéphane Vuilleumier - Tanja Woyke - Claudia Knief
• Factors beyond Enolase 2 and Mitochondrial Lysyl-tRNA Synthetase Precursor Are Required for tRNA Import into Yeast Mitochondria., Biochemistry. Biokhimiia | 2017
  Auteur·e·s : Mariia Baleva - Melanie Meyer - Nina Entelis - Ivan Tarassov - P. Kamenski - Benoit Masquida
• Fitness trade-offs lead to suppressor tolerance in yeast, Mol. Biol. Evol. | 2017
  Auteur·e·s : Jing Hou - Joseph Schacherer
• Genetic backgrounds and hidden trait complexity in natural populations, Current Opinion in Genetics & Development | 2017
  Auteur·e·s : Téo Fournier - Joseph Schacherer
• Genome Sequence of the Dichloromethane-Degrading Bacterium Hyphomicrobium sp. Strain GJ21, Genome Announcements | 2017
  Auteur·e·s : Françoise Bringel - Christiaan Postema - Sophie Mangenot - Sabrina Bibi-triki - Pauline Chaignaud - Muhammad Farhan Ul Haque - Christelle Gruffaz - Louis Hermon - Yousra Louhichi - Bruno Maucourt - Emilie Muller - Thierry Nadalig - Aurélie Lajus - Zoé Rouy - Claudine Médigue - Valérie Barbe - Dick Janssen - Stéphane Vuilleumier
• Genomic and Transcriptomic Analysis of Growth-Supporting Dehalogenation of Chlorinated Methanes in Methylobacterium, Frontiers in Microbiology | 2017
  Auteur·e·s : Pauline Chaignaud - Bruno Maucourt - Marion Weiman - Adriana Alberti - Steffen Kolb - Stéphane Cruveiller - Stéphane Vuilleumier - Françoise Bringel
• High-Quality de Novo Genome Assembly of the Dekkera bruxellensis Yeast Using Nanopore MinION Sequencing, G3 | 2017
  Auteur·e·s : Téo Fournier - Jean-sebastien Gounot - Kelle Freel - Corinne Cruaud - Arnaud Lemainque - Jean-Marc Aury - Patrick Wincker - Joseph Schacherer - Anne Friedrich
• Hopanoid-free Methylobacterium extorquens DM4 overproduces carotenoids and has widespread growth impairment, PLoS ONE | 2017
  Auteur·e·s : Alexander Bradley - Paige Swanson - Emilie Muller - Françoise Bringel - Sean Caroll - Ann Pearson - Stéphane Vuilleumier - Christopher Marx
• LipL21 lipoprotein binding to peptidoglycan enables Leptospira interrogans to escape NOD1 and NOD2 recognition, PLoS Pathogens | 2017
  Auteur·e·s : Gwenn Ratet - Ignacio Santecchia - Martine Fanton d’Andon - Frédérique Vernel-Pauillac - Richard Wheeler - Pascal Lenormand - Frédéric Fischer - Pierre Lechat - David A. Haake - Mathieu Picardeau - Ivo G. Boneca - Catherine Werts
• Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks, PLoS Computational Biology | 2017
  Auteur·e·s : Sylvain Prigent - Clémence Frioux - Simon Dittami - Sven Thiele - Abdelhalim Larhlimi - Guillaume Collet - Fabien Gutknecht - Jeanne Got - Damien Eveillard - Jérémie Bourdon - Frederic Plewniak - Thierry Tonon - Anne Siegel
• Metabolic regulation: a master role for ribulose-1,5-bisphosphate in one-carbon assimilation, Current Biology | 2017
  Auteur·e·s : Françoise Bringel - Stéphane Vuilleumier
• Mismatch Repair Incompatibilities in Diverse Yeast Populations, Genetics | 2017
  Auteur·e·s : Duyen Bui - Anne Friedrich - Najla Al-Sweel - Gianni Liti - Joseph Schacherer - Charles Aquadro - Eric Alani
• Phenotypic Diagnosis of Lineage and Differentiation During Sake Yeast Breeding, G3 | 2017
  Auteur·e·s : Shinsuke Ohnuki - Hiroki Okada - Anne Friedrich - Yoichiro Kanno - Tetsuya Goshima - Hirokazu Hasuda - Masaaki Inahashi - Naoto Okazaki - Hiroyasu Tamura - Ryo Nakamura - Dai Hirata - Hisashi Fukuda - Hitoshi Shimoi - Katsuhiko Kitamoto - Daisuke Watanabe - Joseph Schacherer - Takeshi Akao - Yoshikazu Ohya
• Phosphoinositides, Major Actors in Membrane Trafficking and Lipid Signaling Pathways, International Journal of Molecular Sciences | 2017
  Auteur·e·s : Johan-Owen De Craene - Dimitri Bertazzi - Séverine Bär - Sylvie Friant
• The complex evolutionary history of aminoacyl-tRNA synthetases, Nucleic Acids Research | 2017
  Auteur·e·s : A Chaliotis - P Vlastaridis - D Mossialos - M Ibba - Hubert Becker - C Stathopoulos - G Amoutzias
• Variation of the meiotic recombination landscape and properties over a broad evolutionary distance in yeasts, PLoS genetics | 2017
  Auteur·e·s : Christian Brion - Sylvain Legrand - Jackson Peter - Claudia Caradec - David Pflieger - Jing Hou - Anne Friedrich - Bertrand Llorente - Joseph Schacherer
• Yeast-bacteria competition induced new metabolic traits through large-scale genomic rearrangements in Lachancea kluyveri, FEMS yeast research | 2017
  Auteur·e·s : Nerve Zhou - Samuele Bottagisi - Michael Katz - Joseph Schacherer - Anne Friedrich - Zoran Gojkovic - Krishna Swamy - Wolfgang Knecht - Concetta Compagno - Jure Piškur
• de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer, GigaScience | 2017
  Auteur·e·s : Benjamin Istace - Anne Friedrich - Léo d'Agata - Sébastien Faye - Emilie Payen - Odette Beluche - Claudia Caradec - Sabrina Davidas - Corinne Cruaud - Gianni Liti - Arnaud Lemainque - Stefan Engelen - Patrick Wincker - Joseph Schacherer - Jean-Marc Aury
• Accumulation of Stable Full-Length Circular Group I Intron RNAs during Heat-Shock, Molecules | 2016
  Auteur·e·s : Kasper Andersen - Bertrand Beckert - Benoit Masquida - Steinar Johansen - Henrik Nielsen
• Arsenite response in Coccomyxa sp. Carn explored by transcriptomic and non-targeted metabolomic approaches, Environmental Microbiology | 2016
  Auteur·e·s : Sandrine Koechler - Philippe Bertin - Frederic Plewniak - Raymonde Baltenweck - Corinne Casiot - Hermann Heipieper - Olivier Bouchez - Florence Arsène-Ploetze - Philippe Hugueney - David Halter
• Beyond the simplicity of Mendelian inheritance, Comptes Rendus Biologies | 2016
  Auteur·e·s : Joseph Schacherer
• Comparative proteomics of Acidithiobacillus ferrooxidans grown in the presence and absence of uranium, Research in Microbiology | 2016
  Auteur·e·s : Linda Dekker - Florence Arsène-Ploetze - Joanne Santini
• Differences in environmental stress response between yeasts is consistent with species-specific lifestyles, Molecular Biology of the Cell | 2016
  Auteur·e·s : C Brion - David Pflieger - S Souali-Crespo - Anne Friedrich - Joseph Schacherer
• Dissection of quantitative traits by bulk segregant mapping in a protoploid yeast species, FEMS yeast research | 2016
  Auteur·e·s : Anastasie Sigwalt - Claudia Caradec - Christian Brion - Jing Hou - Jacky De Montigny - Paul Jung - Gilles Fischer - Bertrand Llorente - Anne Friedrich - Joseph Schacherer
• Diversity of vaginal lactic acid bacterial microbiota in 15 Algerian pregnant women with and without bacterial vaginosis by using culture independent method, Journal of clinical and diagnostic research | 2016
  Auteur·e·s : Souad Alioua - Akila Abdi - Imene Fhoula - Françoise Bringel - Abdelatif Boudabous - Imene Ouzari
• Draft genome sequences of gammaproteobacterial methanotrophs isolated from marine ecosystems, Genome Announcements | 2016
  Auteur·e·s : James Flynn - Hisako Hirayama - Yasuyoshi Sakai - Peter Dunfield - Martin Klotz - Claudia Knief - Huub Op den Camp - Mike Jetten - Valentina Khmelenina - Yuri Trotsenko - J Murrell - Jeremy Semrau - Mette Svenning - Lisa Stein - Nikos Kyrpides - Nicole Shapiro - Tanja Woyke - Françoise Bringel - Stéphane Vuilleumier - Alan DiSpirito - Marina Kalyuzhnaya
• IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses, Genome biology | 2016
  Auteur·e·s : S Narayanasamy - Y Jarosz - Emilie Muller - A Heintz-Buschart - M Herold - A Kaysen - C Laczny - N Pinel - P May - P Wilmes
• In situ phenotypic heterogeneity among single cells of the filamentous bacterium Candidatus Microthrix parvicella, ISME Journal | 2016
  Auteur·e·s : Abdul Sheik - Emilie Muller - Jean-Nicolas Audinot - Laura Lebrun - Patrick Grysan - Cedric Guignard - Paul Wilmes
• Large-Scale Survey of Intraspecific Fitness and Cell Morphology Variation in a Protoploid Yeast Species, G3 | 2016
  Auteur·e·s : Paul Jung - Anastasie Sigwalt - Shinsuke Ohnuki - Jacky De Montigny - Yoshikazu Ohya - Joseph Schacherer
• Methanobactin and the link between copper and bacterial methane oxidation, Microbiology and Molecular Biology Reviews | 2016
  Auteur·e·s : Alan DiSpirito - Jeremy Semrau - J Murrell - Warren Gallagher - Christopher Dennison - Stéphane Vuilleumier
• Negative epistasis: a route to intraspecific reproductive isolation in yeast?, Current Genetics | 2016
  Auteur·e·s : Jing Hou - Joseph Schacherer
• On the Mapping of Epistatic Genetic Interactions in Natural Isolates: Combining Classical Genetics and Genomics, Methods in Molecular Biology | 2016
  Auteur·e·s : Jing Hou - Joseph Schacherer
• Population genomics of yeasts: towards a comprehensive view across a broad evolutionary scale, Yeast | 2016
  Auteur·e·s : Jackson Peter - Joseph Schacherer
• Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus, Genome Research | 2016
  Auteur·e·s : Nikolaos Vakirlis - Véronique Sarilar - Guénola Drillon - Aubin Fleiss - Nicolas Agier - Jean-Philippe Meyniel - Lou Blanpain - Alessandra Carbone - Hugo Devillers - Kenny Dubois - Alexandre Gillet-Markowska - Stéphane Graziani - Nguyen Huu-Vang - Marion Poirel - Cyrielle Reisser - Jonathan Schott - Joseph Schacherer - Ingrid Lafontaine - Bertrand Llorente - Cécile Neuvéglise - Gilles Fischer
• Spatial Distribution of Eukaryotic Communities Using High-Throughput Sequencing Along a Pollution Gradient in the Arsenic-Rich Creek Sediments of Carnoulès Mine, France, Microbial Ecology | 2016
  Auteur·e·s : A Volant - M Héry - A Desoeuvre - C Casiot - G Morin - Philippe Bertin - O Bruneel
• Spatio-Temporal Detection of the Thiomonas Population and the Thiomonas Arsenite Oxidase Involved in Natural Arsenite Attenuation Processes in the Carnoulès Acid Mine Drainage, Frontiers in Cell and Developmental Biology | 2016
  Auteur·e·s : Agnes Hovasse - Odile Bruneel - Corinne Casiot - Angélique Desoeuvre - Julien Farasin - Marina Hery - Alain Van Dorsselaer - Christine Carapito - Florence Arsène-Ploetze
• Species-wide survey reveals the various flavors of intraspecific reproductive isolation in yeast, FEMS yeast research | 2016
  Auteur·e·s : Jing Hou - Téo Fournier - Joseph Schacherer
• The Hidden Complexity of Mendelian Traits across Natural Yeast Populations, Cell Reports | 2016
  Auteur·e·s : Jing Hou - Anastasie Sigwalt - Téo Fournier - David Pflieger - Jackson Peter - Jacky De Montigny - Maitreya Dunham - Joseph Schacherer
• The microbial genomics of arsenic, FEMS Microbiology Reviews | 2016
  Auteur·e·s : Jérémy Andres - Philippe Bertin
• Transfer of a catabolic pathway for chloromethane in Methylobacterium strains highlights different limitations for growth with chloromethane or with dichloromethane, Frontiers in Microbiology | 2016
  Auteur·e·s : Joshua Michener - Stéphane Vuilleumier - Françoise Bringel - Christopher Marx
• Variants in the Oxidoreductase PYROXD1 Cause Early-Onset Myopathy with Internalized Nuclei and Myofibrillar Disorganization, The American Journal of Human Genetics | 2016
  Auteur·e·s : Gina L. O’Grady - Heather A. Best - Tamar E. Sztal - Vanessa Schartner - Myriam Sanjuan-Vazquez - Sandra Donkervoort - Osorio Abath Neto - Roger Bryan Sutton - Biljana Ilkovski - Norma Beatriz Romero - Tanya Stojkovic - Jahannaz Dastgir - Leigh B. Waddell - Anne Boland - Ying Hu - Caitlin Williams - Avnika A. Ruparelia - Thierry Maisonobe - Anthony J. Peduto - Stephen W. Reddel - Monkol Lek - Taru Tukiainen - Beryl B. Cummings - Himanshu Joshi - Juliette Nectoux - Susan Brammah - Jean-François Deleuze - Viola Oorschot Ing - Georg Ramm - Didem Ardicli - Kristen J. Nowak - Beril Talim - Haluk Topaloglu - Nigel G. Laing - Kathryn N. North - Daniel G. MacArthur - Sylvie Friant - Nigel F. Clarke - Robert J. Bryson-Richardson - Carsten G. Bönnemann - Jocelyn Laporte - Sandra T. Cooper
• Whole-Genome Sequencing and Intraspecific Analysis of the Yeast Species Lachancea quebecensis, Genome Biology and Evolution | 2016
  Auteur·e·s : Kelle Freel - Anne Friedrich - Véronique Sarilar - Hugo Devillers - Cécile Neuveglise - Joseph Schacherer
• A Moonlighting Human Protein Is Involved in Mitochondrial Import of tRNA, International Journal of Molecular Sciences | 2015
  Auteur·e·s : Mariia Baleva - Ali Gowher - Piotr Kamenski - Ivan Tarassov - Nina Entelis - Benoit Masquida
• A Moonlighting Human Protein Is Involved in Mitochondrial Import of tRNA, International Journal of Molecular Sciences | 2015
  Auteur·e·s : Mariia Baleva - Ali Gowher - Piotr Kamenski - Ivan Tarassov - Nina Entelis - Benoit Masquida
• A glyS T-box riboswitch with species-specific structural features responding to both proteinogenic and nonproteinogenic tRNAGly isoacceptors, RNA | 2015
  Auteur·e·s : M Apostolidi - N Saad - D Drainas - S Pournaras - Hubert Becker - C Stathopoulos
• Comprehensive survey of condition-specific reproductive isolation reveals genetic incompatibility in yeast, Nature Communications | 2015
  Auteur·e·s : Jing Hou - Anne Friedrich - Jean-Sébastien Gounot - Joseph Schacherer
• Concomitant evaluation of atmospheric levels of polychlorinated biphenyls, organochlorine pesticides, and polycyclic aromatic hydrocarbons in Strasbourg (France) using pine needle passive samplers, Environmental Science and Pollution Research | 2015
  Auteur·e·s : Enaam Al Dine - Haifaa Mokbel - Ahmad Elmoll - Sylvie Massemin - Stéphane Vuilleumier - Joumana Toufaily - Tayssir Hanieh - Maurice Millet
• Degradation of chloroacetanilide herbicides and bacterial community composition in lab-scale wetlands, Science of the Total Environment | 2015
  Auteur·e·s : Omniea Elsayed - Elodie Maillard - Stéphane Vuilleumier - Maurice Millet - Gwenaël Imfeld
• Draft Genome Sequence of Lachancea lanzarotensis CBS 12615T, an Ascomycetous Yeast Isolated from Grapes, Genome Announcements | 2015
  Auteur·e·s : V Sarilar - H Devillers - K Freel - Joseph Schacherer - C Neuveglise
• Draft genome sequence of the moderately halophilic methanotroph Methylohalobius crimeensis strain 10Ki, Genome Announcements | 2015
  Auteur·e·s : Christine Sharp - Angela Smirnova - Marina Kalyuzhnaya - Françoise Bringel - Hisako Hirayama - Mike Jetten - Valentina Khmelenina - Martin Klotz - Claudia Knief - Nikos Kyrpides - Huub Op den Camp - Alexander Reshetnikov - Yasuyoshi Sakai - Nicole Shapiro - Yuri Trotsenko - Stéphane Vuilleumier - Tanja Woyke - Peter Dunfield
• Draft genomes of gammaproteobacterial methanotrophs isolated from terrestrial ecosystems, Genome Announcements | 2015
  Auteur·e·s : Richard Hamilton - K Kits - Victoria Ramonovskaya - Olga Rozova - Hiroya Yurimoto - Hiroyuki Iguchi - Valentina Khmelenina - Yasuyoshi Sakai - Peter Dunfield - Martin Klotz - Claudia Knief - Huub Op den Camp - Mike Jetten - Françoise Bringel - Stéphane Vuilleumier - Mette Svenning - Nicole Shapiro - Tanja Woyke - Yuri Trotsenko - Lisa Stein - Marina Kalyuzhnaya
• Environmental microbiology as a mosaic of explored ecosystems and issues, Environmental Science and Pollution Research | 2015
  Auteur·e·s : Denis Faure - Patricia Bonin - Robert Duran - Florence Arsène-Ploetze - the Microbial Ecology EC2CO consortium - Philippe Bertin - Frederic Plewniak - Stéphane Vuilleumier
• Evolution of intraspecific transcriptomic landscapes in yeasts, Nucleic Acids Research | 2015
  Auteur·e·s : Christian Brion - David Pflieger - Anne Friedrich - Joseph Schacherer
• Evolutionary dynamics of hAT DNA transposon families in Saccharomycetaceae, Genome Biology and Evolution | 2015
  Auteur·e·s : V Sarilar - Claudine Bleykasten-Grosshans - C Neuveglise
• LOOP IIId of the HCV IRES is essential for the structural rearrangement of the 40S-HCV IRES complex, Nucleic Acids Research | 2015
  Auteur·e·s : Jenniffer Angulo - Nathalie Ulryck - Julie Deforges - Nathalie Chamond - Marcelo Lopez-Lastra - Benoit Masquida - Bruno Sargueil
• Lachancea quebecensis sp. nov., a yeast species consistently isolated from tree bark in the Canadian province of Quebec, International Journal of Systematic and Evolutionary Microbiology | 2015
  Auteur·e·s : K Freel - G Charron - J Leducq - C Landry - Joseph Schacherer
• Les phosphoinositides, des lipides acteurs essentiels du trafic intracellulaire. [Phosphoinositides: lipidic essential actors in the intracellular traffic], Biologie Aujourd'hui | 2015
  Auteur·e·s : Dimitri Bertazzi - Johan De Craene - Séverine Bär - Myriam Sanjuan-Vazquez - Matthieu Raess - Sylvie Friant
• Membrane trafficking in the yeast Saccharomyces cerevisiae model, International Journal of Molecular Sciences | 2015
  Auteur·e·s : Serge Feyder - Johan De Craene - Severine Bar - Dimitri Bertazzi - Sylvie Friant
• Method of carrier-free delivery of therapeutic RNA importable into human mitochondria: Lipophilic conjugates with cleavable bonds, Biomaterials | 2015
  Auteur·e·s : Ilya Dovydenko - Ivan Tarassov - Alya Venyaminova - Nina Entelis
• Mitochondrial genome evolution in yeasts: an all-encompassing view, FEMS Yeast Research | 2015
  Auteur·e·s : K Freel - Anne Friedrich - Joseph Schacherer
• Mitochondrial targeting of recombinant RNA, Methods in Molecular Biology | 2015
  Auteur·e·s : I Dovydenko - Anne-Marie Heckel - Y Tonin - A Gowher - A Venyaminova - Ivan Tarassov - Nina Entelis
• Pivotal roles of phyllosphere microorganisms at the interface between plant functioning and atmospheric trace gas dynamics, Frontiers in Microbiology | 2015
  Auteur·e·s : Françoise Bringel - Ivan Couee
• Population genomics reveals chromosome-scale heterogeneous evolution in a protoploid yeast, Molecular Biology and Evolution | 2015
  Auteur·e·s : Anne Friedrich - P Jung - C Reisser - G Fischer - Joseph Schacherer
• Proteomic tools to decipher microbial community structure and functioning, Environmental Science and Pollution Research | 2015
  Auteur·e·s : Florence Arsène-Ploetze - Philippe Bertin - Christine Carapito
• Recent advances in microbiology: towards new horizons?, Research in Microbiology | 2015
  Auteur·e·s : Philippe Bertin
• Tetrachloromethane-degrading bacterial enrichment cultures and isolates from a contaminated aquifer, Microorganisms | 2015
  Auteur·e·s : C Penny - Christelle Gruffaz - Thierry Nadalig - H.-M. Cauchi - Stéphane Vuilleumier - Françoise Bringel
• Toxic metal resistance in biofilms: diversity of microbial responses and their evolution, Research in Microbiology | 2015
  Auteur·e·s : Sandrine Koechler - Julien Farasin - Jessica Cleiss-Arnold - Florence Arsène-Ploetze
• Arsenic hypertolerance in the protist Euglena mutabilis is mediated by specific transporters and functional integrity maintenance mechanisms, Environmental Microbiology | 2014
  Auteur·e·s : David Halter - Jérémy Andres - Frederic Plewniak - Julie Poulain - Corinne Da Silva - Florence Arsène-Ploetze - Philippe Bertin
• Bacterial communities in batch and continuous-flow wetlands treating the herbicide S-metolachlor, Science of the Total Environment | 2014
  Auteur·e·s : O Elsayed - Elodie Maillard - Stéphane Vuilleumier - Gwenaël Imfeld
• Btn3 regulates the endosomal sorting function of the yeast Ent3 epsin, an adaptor for SNARE proteins, Journal of Cell Science | 2014
  Auteur·e·s : Joëlle Morvan - Johan De Craene - Bruno Rinaldi - Vanessa Addis - Cédric Misslin - Sylvie Friant
• Characterization of chemically modified oligonucleotides targeting a pathogenic mutation in human mitochondrial DNA, Biochimie | 2014
  Auteur·e·s : Y Tonin - Anne-Marie Heckel - I Dovydenko - M Meschaninova - C Comte - A Venyaminova - D Pyshnyi - Ivan Tarassov - Nina Entelis
• Characterization of chemically modified oligonucleotides targeting a pathogenic mutation in human mitochondrial DNA, Biochimie | 2014
  Auteur·e·s : Yann Tonin - Anne-Marie Heckel - Ilya Dovydenko - Mariya Meschaninova - Caroline Comte - Alya Venyaminova - Dmitrii Pyshnyi - Ivan Tarassov - Nina Entelis
• Chromosomal rearrangements as a major mechanism in the onset of reproductive isolation in Saccharomyces cerevisiae, Current Biology | 2014
  Auteur·e·s : Jing Hou - Anne Friedrich - Jacky de Montigny - Joseph Schacherer
• Crystal structure of Saccharomyces cerevisiae mitochondrial GatFAB reveals a novel subunit assembly in tRNA-dependent amidotransferases, Nucleic Acids Research | 2014
  Auteur·e·s : Yuhei Araiso - Jonathan Huot - T Sekiguchi - M Frechin - F Fischer - Ludovic Enkler - Bruno Senger - R Ishitani - Hubert Becker - O Nureki
• Differential expression of Ixodes ricinus salivary gland proteins in the presence of the Borrelia burgdorferi sensu lato complex, Journal of Proteomics | 2014
  Auteur·e·s : Violaine Cotté - Laurence Sabatier - Gilles Schnell - Annick Carmi-Leroy - Jean-Claude Rousselle - Florence Arsène-Ploetze - Laurence Malandrin - Natacha Sertour - Abdelkader Namane - Elisabeth Ferquel - Valérie Choumet
• Diversity and spatiotemporal dynamics of bacterial communities: physicochemical and other drivers along an acid mine drainage, FEMS Microbiology Ecology | 2014
  Auteur·e·s : Aurélie Volant - Odile Bruneel - Angélique Desoeuvre - Marina Héry - Corinne Casiot - Noëlle Bru - Sophie Delpoux - Anne Fahy - Fabien Javerliat - Olivier Bouchez - Robert Duran - Philippe Bertin - Françoise Elbaz-Poulichet - Béatrice Lauga
• Effective use of a horizontally-transferred pathway for dichloromethane catabolism requires post-transfer refinement, eLife | 2014
  Auteur·e·s : Joshua Michener - Aline Camargo Neves - Stéphane Vuilleumier - Françoise Bringel - Christopher Marx
• Exploring the evolutionary diversity and assembly modes of multi-aminoacyl-tRNA synthetase complexes: lessons from unicellular organisms, FEBS Letters | 2014
  Auteur·e·s : Daphné Laporte - Jonathan Huot - GaËtan Bader - Ludovic Enkler - Bruno Senger - Hubert Becker
• Genes of the N-methylglutamate pathway are essential for growth of Methylobacterium extorquens DM4 with monomethylamine, Applied and Environmental Microbiology | 2014
  Auteur·e·s : Christelle Gruffaz - Emilie Muller - Yousra Louhichi-Jelail - Yella Nelli - Gilles Guichard - Françoise Bringel
• Genome Sequence of the Yeast Cyberlindnera fabianii (Hansenula fabianii), Genome Announcements | 2014
  Auteur·e·s : K Freel - V Sarilar - C Neuveglise - H Devillers - Anne Friedrich - Joseph Schacherer
• Genomic and transcriptomic analyses of the facultative methanotroph Methylocystis sp. strain SB2 grown on methane or ethanol, Applied and Environmental Microbiology | 2014
  Auteur·e·s : Alexey Vorobev - Sheeja Jagadevan - Sunit Jain - Karthik Anantharaman - Gregory Dick - Stéphane Vuilleumier - Jeremy Semrau
• Mitochondria: an organelle for life, Biochimie | 2014
  Auteur·e·s : Laurence Maréchal-Drouard - Marie Anne Sissler - Ivan Tarassov
• Modeling of Antigenomic Therapy of Mitochondrial Diseases by Mitochondrially Addressed RNA Targeting a Pathogenic Point Mutation in Mitochondrial DNA, Journal of Biological Chemistry | 2014
  Auteur·e·s : Yann Tonin - Anne-Marie Heckel - Mikhail Vysokikh - Ilya Dovydenko - Mariya Meschaninova - Agnès Rötig - Arnold Munnich - Alya Venyaminova - Ivan Tarassov - Nina Entelis
• Modeling of antigenomic therapy of mitochondrial diseases by mitochondrially addressed RNA targeting a pathogenic point mutation in mitochondrial DNA, Journal of Biological Chemistry | 2014
  Auteur·e·s : Y Tonin - Anne-Marie Heckel - M Vysokikh - I Dovydenko - M Meschaninova - A Rotig - A Munnich - A Venyaminova - Ivan Tarassov - Nina Entelis
• Molecular characterization of a new member of the lariat capping twin-ribozyme introns, Mobile DNA | 2014
  Auteur·e·s : Yunjia Tang - Henrik Nielsen - Benoit Masquida - Paul P. Gardner - Steinard D. Johansen
• Pathologies de l'ADN mitochondrial et stratégies thérapeutiques [Mitochondrial DNA diseases and therapeutic strategies], médecine/sciences | 2014
  Auteur·e·s : Y Tonin - Nina Entelis
• Pathologies de l’ADN mitochondrial et stratégies thérapeutiques, médecine/sciences | 2014
  Auteur·e·s : Yann Tonin - Nina Entelis
• Phylogeny poorly predicts the utility of a challenging horizontally transferred gene in Methylobacterium strains, Journal of Bacteriology | 2014
  Auteur·e·s : Joshua Michener - Stéphane Vuilleumier - Françoise Bringel - Christopher Marx
• Population genomic analysis reveals highly conserved mitochondrial genomes in the yeast species Lachancea thermotolerans, Genome Biology and Evolution | 2014
  Auteur·e·s : K Freel - Anne Friedrich - Jing Hou - Joseph Schacherer
• Probing the diversity of chloromethane-degrading bacteria by comparative genomics and isotopic fractionation, Frontiers in Microbiology | 2014
  Auteur·e·s : Thierry Nadalig - Markus Greule - Françoise Bringel - Frank Keppler - Stéphane Vuilleumier
• Pyoverdine synthesis by the Mn(II)-oxidizing bacterium Pseudomonas putida GB-1, Frontiers in Microbiology | 2014
  Auteur·e·s : Dorothy L. Parker - Sung-Woo Lee - Kati Geszvain - Richard E. Davies - Christelle Gruffaz - Jean-Marie Meyer - Justin W. Torpey - Bradley M. Tebo
• Rapid impact of phenanthrene and arsenic on bacterial community structure and activities in sand batches, Microbial Ecology | 2014
  Auteur·e·s : Aurélie Cébron - Florence Arsène-Ploetze - Pascale Bauda - Philippe Bertin - Patrick Billard - Christine Carapito - Simon Devin - Florence Goulhen-Chollet - Jessica Poirel - Corinne Leyval
• Screening of lactic acid bacteria for their potential as microbial cell factories for bioconversion of lignocellulosic feedstocks, Microbial Cell Factories | 2014
  Auteur·e·s : Anna Boguta - Françoise Bringel - Jan Martinussen - Peter Jensen
• Study of the plant COPII vesicle coat subunits by functional complementation of yeast Saccharomyces cerevisiae mutants, PLoS ONE | 2014
  Auteur·e·s : Johan De Craene - F Courte - Bruno Rinaldi - Chantal Fitterer - M Herranz - Corinne Schmitt-keichinger - Christophe Ritzenthaler - Sylvie Friant
• The coming of age of microbial ecotoxicology: report on the first two meetings in France, Environmental Science and Pollution Research | 2014
  Auteur·e·s : Jean-François Ghiglione - Fabrice Martin-Laurent - Sabine Stachowski-Haberkorn - Stephane Pesce - Stéphane Vuilleumier
• The complete genome of Blastobotrys (Arxula) adeninivorans LS3 - a yeast of biotechnological interest, Biotechnology for Biofuels | 2014
  Auteur·e·s : G Kunze - C Gaillardin - M Czernicka - P Durrens - T Martin - E Boer - T Gabaldon - J Cruz - E Talla - C Marck - A Goffeau - V Barbe - P Baret - K Baronian - S Beier - Claudine Bleykasten - R Bode - S Casaregola - Laurence Despons - C Fairhead - M Giersberg - P Gierski - U Hahnel - A Hartmann - D Jankowska - C Jubin - P Jung - I Lafontaine - V Leh-Louis - M Lemaire - M Marcet-Houben - M Mascher - G Morel - G Richard - J Riechen - C Sacerdot - A Sarkar - G Savel - Joseph Schacherer - D Sherman - N Stein - M Straub - A Thierry - A Trautwein-Schult - B Vacherie - Eric Westhof - S Worch - B Dujon - J Souciet - P Wincker - U Scholz - C Neuveglise
• TiO2 photocatalysis damages lipids and proteins in Escherichia coli, Applied and Environmental Microbiology | 2014
  Auteur·e·s : Gaëlle Carré - Erwann Hamon - Saïd Ennahar - Maxime Estner - Marie-Claire Lett - Peter Horvatovich - Jean-pierre Gies - Valérie Keller - Nicolas Keller - Philippe Andre
• Using compound-specific isotope analysis to assess the degradation of chloroacetanilide herbicides in lab-scale wetlands, Chemosphere | 2014
  Auteur·e·s : O Elsayed - E Maillard - Stéphane Vuilleumier - I Nijenhuis - H Richnow - Gwenaël Imfeld
• Bacterial metabolism of environmental arsenic--mechanisms and biotechnological applications, Applied Microbiology and Biotechnology | 2013
  Auteur·e·s : Martin Kruger - Philippe Bertin - Hermann Heipieper - Florence Arsène-Ploetze
• Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm, Nucleic Acids Research | 2013
  Auteur·e·s : K Nozawa - R Ishitani - T Yoshihisa - M Sato - F Arisaka - S Kanamaru - N Dohmae - D Mangroo - Bruno Senger - Hubert Becker - O Nureki
• Draft genome sequence of Methylomicrobium buryatense strain 5G, a haloalkaline-tolerant methanotrophic bacterium, Genome Announcements | 2013
  Auteur·e·s : Valentina Khmelenina - David Beck - Christine Munk - Karen Davenport - Hajnalka Daligault - Tracy Erkkila - Lynne Goodwin - Wei Gu - Chien-Chi Lo - Matthew Scholz - Hazuki Teshima - Yan Xu - Patrick Chain - Françoise Bringel - Stéphane Vuilleumier - Alan Dispirito - Peter Dunfield - Mike Jetten - Martin Klotz - Claudia Knief - J Murrell - Huub Op den Camp - Yasuyoshi Sakai - Jeremy Semrau - Mette Svenning - Lisa Stein - Yuri Trotsenko - Marina Kalyuzhnaya
• Fluorescence-based bacterial bioreporter for specific detection of methyl halide emissions in the environment, Applied and Environmental Microbiology | 2013
  Auteur·e·s : Muhammad Farhan Ul Haque - Thierry Nadalig - Françoise Bringel - Hubert Schaller - Stéphane Vuilleumier
• Genetic Basis of Ammonium Toxicity Resistance in a Sake Strain of Yeast: A Mendelian Case, G3 | 2013
  Auteur·e·s : C Reisser - C Dick - L Kruglyak - D Botstein - Joseph Schacherer - D Hess
• Genome Sequence of Halomonas sp. Strain A3H3, Isolated from Arsenic-Rich Marine Sediments, Genome Announcements | 2013
  Auteur·e·s : Sandrine Koechler - Frédéric Plewniak - Valérie Barbe - Fabienne Battaglia-Brunet - Bernard Jost - Catherine Joulian - Muriel Philipps - Serge Vicaire - Stéphanie Vincent - Tao Ye - Philippe Bertin
• Genome Sequence of the Sulfate-Reducing Bacterium Desulfotomaculum hydrothermale Lam5(T), Genome Announcements | 2013
  Auteur·e·s : Oulfat Amin - Marie-Laure Fardeau - Odile Valette - Agnès Hirschler-Réa - Valérie Barbe - Claudine Médigue - Benoit Vacherie - Bernard Ollivier - Philippe Bertin - Alain Dolla
• Genome sequence of the obligate gammaproteobacterial methanotroph Methylomicrobium album strain BG8, Genome Announcements | 2013
  Auteur·e·s : K Kits - Marina Kalyuzhnaya - Martin Klotz - Mike Jetten - Huub Op den Camp - Stéphane Vuilleumier - Françoise Bringel - Alan Dispirito - J Murrell - D Bruce - J Cheng - A Copeland - Lynne Goodwin - Loren Hauser - Aurelie Lajus - M Land - A Lapidus - S Lucas - Claudine Medigue - S Pitluck - Tanja Woyke - A Zeytun - Lisa Stein
• Genome-wide analysis of intraspecific transposon diversity in yeast, BMC Genomics | 2013
  Auteur·e·s : Claudine Bleykasten-Grosshans - Anne Friedrich - Joseph Schacherer
• Highly efficient methane biocatalysis revealed in a methanotrophic bacterium, Nature Communications | 2013
  Auteur·e·s : M Kalyuzhnaya - S Yang - O Rozova - N Smalley - J Clubb - A Lamb - G Gowda - D Raftery - Y Fu - Françoise Bringel - Stéphane Vuilleumier - D Beck - Y Trotsenko - V Khmelenina - M Lidstrom
• Hydrogen and carbon isotope fractionation during degradation of chloromethane by methylotrophic bacteria, MicrobiologyOpen | 2013
  Auteur·e·s : Thierry Nadalig - Markus Greule - Françoise Bringel - Stéphane Vuilleumier - Frank Keppler
• Induced tRNA import into human mitochondria: implication of a host aminoacyl-tRNA-synthetase, PLoS ONE | 2013
  Auteur·e·s : A Gowher - Alexander Smirnov - Ivan Tarassov - Nina Entelis
• Life in an arsenic-containing gold mine: Genome and physiology of the autotrophic arsenite-oxidizing bacterium Rhizobium sp. NT-26, Genome Biology and Evolution | 2013
  Auteur·e·s : J Andres - Florence Arsène-Ploetze - V Barbe - C Brochier-Armanet - J Cleiss-Arnold - J Coppée - M Dillies - L Geist - A Joublin - Sandrine Koechler - F Lassalle - M Marchal - C Médigue - D Muller - X Nesme - Frédéric Plewniak - C Proux - M Ramírez-Bahena - C Schenowitz - O Sismeiro - D Vallenet - J Santini - Philippe Bertin
• Lsb1 is a negative regulator of las17 dependent actin polymerization involved in endocytosis, PLoS ONE | 2013
  Auteur·e·s : M Spiess - Johan de Craene - A Michelot - Bruno Rinaldi - Aline Huber - D Drubin - B Winsor - Sylvie Friant
• Metagenomic insights into microbial metabolism affecting arsenic dispersion in Mediterranean marine sediments, Molecular Ecology | 2013
  Auteur·e·s : Frederic Plewniak - Sandrine Koechler - Benjamin Navet - Eric Dugat-Bony - Olivier Bouchez - Pierre Peyret - Fabienne Séby - Fabienne Battaglia-Brunet - Philippe Bertin
• Methanobactin and MmoD work in concert to act as the 'copper-switch' in methanotrophs, Environmental Microbiology | 2013
  Auteur·e·s : Jeremy Semrau - Sheeja Jagadevan - Alan DiSpirito - Ashraf Khalifa - Julie Scanlan - Brandt Bergman - Brittani Freemeier - Bipin Baral - Nathan Bandow - Alexey Vorobev - Daniel Haft - Stéphane Vuilleumier - J Murrell
• Role of polyadenylation in regulation of the flagella cascade and motility in Escherichia coli, Biochimie | 2013
  Auteur·e·s : Alexandre Maes - Céline Gracia - Dominique Bréchemier - Philippe Hamman - Elodie Chatre - Laurence Lemelle - Philippe Bertin - Eliane Hajnsdorf
• Single-cell phenomics reveals intra-species variation of phenotypic noise in yeast, BMC Systems Biology | 2013
  Auteur·e·s : G Yvert - S Ohnuki - S Nogami - Y Imanaga - S Fehrmann - Joseph Schacherer - Y Ohya
• The 380 kb pCMU01 plasmid encodes chloromethane utilization genes and redundant genes for vitamin B12- and tetrahydrofolate-dependent chloromethane metabolism in Methylobacterium extorquens CM4: A proteomic and bioinformatics study, PLoS ONE | 2013
  Auteur·e·s : Sandro Roselli - Thierry Nadalig - Stéphane Vuilleumier - Françoise Bringel
• Yeast and bacterial diversity along a transect in an acidic, As-Fe rich environment revealed by cultural approaches, Science of the Total Environment | 2013
  Auteur·e·s : François Delavat - Marie-Claire Lett - Didier Lièvremont
• A deubiquitylating complex required for neosynthesis of a yeast mitochondrial ATP synthase subunit, PLoS ONE | 2012
  Auteur·e·s : S Kanga - D Bernard - Anne-Marie Mager-Heckel - Z Erpapazoglou - F Mattiroli - T Sixma - S Leon - D Urban-Grimal - Ivan Tarassov - R Haguenauer-Tsapis
• Amylases without known homologues discovered in an acid mine drainage: Significance and impact, Scientific Reports | 2012
  Auteur·e·s : F Delavat - V Phalip - A Forster - Frédéric Plewniak - M Lett - Didier Lievremont
• Archaeal diversity: temporal variation in the arsenic-rich creek sediments of Carnoulès Mine, France, Extremophiles | 2012
  Auteur·e·s : A Volant - A Desoeuvre - C Casiot - B Lauga - S Delpoux - G Morin - J Personné - M Héry - F Elbaz-Poulichet - Philippe Bertin - O Bruneel
• Comparative mitochondrial genomics within and among yeast species of the Lachancea genus, PLoS ONE | 2012
  Auteur·e·s : Anne Friedrich - P Jung - Jing Hou - C Neuveglise - Joseph Schacherer
• Complete genome sequences of six strains of the genus Methylobacterium, Journal of Bacteriology | 2012
  Auteur·e·s : Christopher Marx - Françoise Bringel - Ludmila Chistoserdova - Lionel Moulin - Muhammad Ul Hague - Darrell Fleischman - Christelle Gruffas - Philippe Jourand - Claudia Knief - Ming-Chun Lee - Emilie Muller - Thierry Nadalig - Remi Peyraud - Sandro Roselli - Lina Russ - Lynne Goodwin - Natalia Ivanova - Nikos Kyrpides - Aurelie Lajus - Miriam Land - Claudine Medigue - Natalia Mikhailova - Matt Nolan - Tanja Woyke - Sergey Stolyar - Julia Vorholt - Stéphane Vuilleumier
• Draft genome sequence of the volcano-inhabiting thermoacidophilic methanotroph Methylacidiphilum fumariolicum strain SolV, Journal of Bacteriology | 2012
  Auteur·e·s : Ahmad Khadem - Adam Wieczorek - Arjan Pol - StÉphane Vuilleumier - Harry Harhangi - Peter Dunfield - Marina Kalyuzhnaya - J Murrell - Kees-Jan Francoijs - Henk Stunnenberg - Lisa Stein - Alan DiSpirito - Jeremy Semrau - Aurelie Lajus - Claudine Medigue - Martin Klotz - Mike Jetten - Huub Op den Camp
• Evolutionary analysis of the ENTH/ANTH/VHS protein superfamily reveals a coevolution between membrane trafficking and metabolism, BMC Genomics | 2012
  Auteur·e·s : Johan O. De Craene - Raymond Ripp - Odile Lecompte - Julie D. Thompson - Olivier Poch - Sylvie Friant
• Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z, Journal of Bacteriology | 2012
  Auteur·e·s : Stéphane Vuilleumier - Valentina Khmelenina - Françoise Bringel - Alexandr Reshetnikov - Aurelie Lajus - Sophie Mangenot - Zoe Rouy - Huub Op den Camp - Mike Jetten - Alan Dispirito - Peter Dunfield - Martin Klotz - Jeremy Semrau - Lisa Stein - Valerie Barbe - Claudine Medigue - Yuri Trotsenko - Marina Kalyuzhnaya
• Human mitochondrial tRNA quality control in health and disease: a channelling mechanism?, RNA Biology | 2012
  Auteur·e·s : R Belostotsky - Y Frishberg - Nina Entelis
• In situ proteo-metabolomics reveals metabolite secretion by the acid mine drainage bio-indicator, Euglena mutabilis, ISME Journal | 2012
  Auteur·e·s : David Halter - Florence Goulhen-Chollet - Sébastien Gallien - Corinne Casiot - Jérôme Hamelin - Françoise Gilard - Dimitri Heintz - Christine Schaeffer - Christine Carapito - Alain Van Dorsselaer - Guillaume Tcherkez - Florence Arsène-Ploetze - Philippe Bertin
• Investigation of biomarkers of bile tolerance in Lactobacillus casei using comparative proteomics, Journal of Proteome Research | 2012
  Auteur·e·s : Erwann Hamon - Peter Horvatovich - Magali Bisch - Françoise Bringel - Eric Marchioni - Dalal Aoude-Werner - Said Ennahar
• Measuring the effects of pesticides on bacterial communities in soil: A critical review, European Journal of Soil Biology | 2012
  Auteur·e·s : Gwenaël Imfeld - Stéphane Vuilleumier
• Mitochondrial genome evolution in a single protoploid yeast species, G3 | 2012
  Auteur·e·s : P Jung - Anne Friedrich - C Reisser - Jing Hou - Joseph Schacherer
• Mitochondrial targeting of recombinant RNAs modulates the level of a heteroplasmic mutation in human mitochondrial DNA associated with Kearns Sayre Syndrome, Nucleic Acids Research | 2012
  Auteur·e·s : C Comte - Y Tonin - A Heckel-Mager - A Boucheham - Alexander Smirnov - K Aure - A Lombes - R Martin - Nina Entelis - Ivan Tarassov
• Mutation in PNPT1, which encodes a polyribonucleotide nucleotidyltransferase, impairs RNA import into mitochondria and causes respiratory-chain deficiency, American Journal of Human Genetics | 2012
  Auteur·e·s : V Vedrenne - A Gowher - P De Lonlay - P Nitschke - V Serre - N Boddaert - C Altuzarra - Anne-Marie Mager-Heckel - F Chretien - Nina Entelis - A Munnich - Ivan Tarassov - A Rotig
• Noncanonical functions of aminoacyl-tRNA synthetases, Биохимия | 2012
  Auteur·e·s : E. Smirnova - V Lakunina - Ivan Tarassov - I Krasheninnikov - P Kamenski
• Novel and unexpected bacterial diversity in an arsenic-rich ecosystem revealed by culture-dependent approaches, Biology Direct | 2012
  Auteur·e·s : François Delavat - Marie-Claire Lett - Didier Lièvremont
• On the use of capillary cytometry for assessing the bactericidal effect of TiO2. Identification and involvement of reactive oxygen species, Photochemical & Photobiological Sciences Photochemical and Photobiological Sciences | 2012
  Auteur·e·s : Gaelle Carré - Dounia Benhamida - Jean Peluso - Christian Muller - Marie-Claire Lett - Jean-pierre Gies - Valerie Keller - Nicolas Keller - Philippe Andre
• Phosphatase-dead myotubularin ameliorates X-linked centronuclear myopathy phenotypes in mice, PLoS Genetics | 2012
  Auteur·e·s : Leonela Amoasii - Dimitri Bertazzi - H Tronchere - Karim Hnia - G Chicanne - Bruno Rinaldi - Belinda Cowling - A Ferry - Bruno Klaholz - B Payrastre - Jocelyn Laporte - Sylvie Friant
• Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization, G3 | 2012
  Auteur·e·s : Veronique Leh-Louis - Laurence Despons - Anne Friedrich - T Martin - P Durrens - S Casaregola - C Neuveglise - C Fairhead - C Marck - José Cruz - Marie-Laure Straub - Valerie Kugler - C Sacerdot - Z Uzunov - A Thierry - S Weiss - Claudine Bleykasten - Jacky De Montigny - N Jacques - Paul Jung - M Lemaire - S Mallet - G Morel - G Richard - A Sarkar - G Savel - Joseph Schacherer - M Seret - E Talla - G Samson - C Jubin - J Poulain - B Vacherie - V Barbe - E Pelletier - D Sherman - Eric Westhof - J Weissenbach - P Baret - P Wincker - C Gaillardin - B Dujon - Jean-luc Souciet
• Pkh1/2-dependent phosphorylation of Vps27 regulates ESCRT-I recruitment to endosomes, Molecular Biology of the Cell | 2012
  Auteur·e·s : J Morvan - Bruno Rinaldi - Sylvie Friant
• Surface properties and intracellular speciation revealed an original adaptive mechanism to arsenic in the acid mine drainage bio-indicator Euglena mutabilis, Applied Microbiology and Biotechnology | 2012
  Auteur·e·s : D Halter - C Casiot - H Heipieper - Frédéric Plewniak - M Marchal - S Simon - Florence Arsène-Ploetze - Philippe Bertin
• The asparagine-transamidosome from Helicobacter pylori: a dual-kinetic mode in non-discriminating aspartyl-tRNA synthetase safeguards the genetic code, Nucleic Acids Research | 2012
  Auteur·e·s : F Fischer - Jonathan Huot - Bernard Lorber - G Diss - T Hendrickson - Hubert Becker - J Lapointe - Daniel Kern
• Unified nomenclature for genes involved in prokaryotic aerobic arsenite oxidation, Journal of Bacteriology | 2012
  Auteur·e·s : Marie-Claire Lett - Daniel Muller - Didier Lievremont - Simon Silver - Joanne Santini
• Biological significance of 5S rRNA import into human mitochondria: role of ribosomal protein MRP-L18, Genes and Development | 2011
  Auteur·e·s : Alexander Smirnov - Nina Entelis - R Martin - Ivan Tarassov
• Characterization of the active bacterial community involved in natural attenuation processes in arsenic-rich creek sediments, Microbial Ecology | 2011
  Auteur·e·s : Odile Bruneel - Aurélie Volant - Sébastien Gallien - Bertrand Chaumande - Corinne Casiot - Christine Carapito - Amélie Bardil - Guillaume Morin - Gordon Brown - Christian Personné - Denis Le Paslier - Christine Schaeffer - Alain Van Dorsselaer - Philippe Bertin - Françoise Elbaz-Poulichet - Florence Arsène-Ploetze
• Chloride-associated adaptive response in aerobic methylotrophic dichloromethane-utilising bacteria, Journal of Basic Microbiology | 2011
  Auteur·e·s : Maria L. Torgonskaya - Nina V. Doronina - Edith Hourcade - Yuri A. Trotsenko - Stéphane Vuilleumier
• Comparative proteomic analysis of Lactobacillus plantarum for the identification of key proteins in bile tolerance, BMC Microbiology | 2011
  Auteur·e·s : Erwann Hamon - Peter Horvatovich - Esther Izquierdo - Françoise Bringel - Eric Marchioni - Dalal Aoude-Werner - Said Ennahar
• Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09, Journal of Bacteriology | 2011
  Auteur·e·s : Rich Boden - Michael Cunliffe - Julie Scanlan - Helene Moussard - K Kits - Martin Klotz - Mike Jetten - Stéphane Vuilleumier - James Han - Lin Peters - Natalia Mikhailova - Hazuki Teshima - Roxanne Tapia - Nikos Kyrpides - Natalia Ivanova - Ioanna Pagani - Jan-Fang Cheng - Lynne Goodwin - Cliff Han - Loren Hauser - Miriam Land - Alla Lapidus - Susan Lucas - Sam Pitluck - Tanja Woyke - Lisa Stein - J Murrell
• Complete genome sequence of the chloromethane-degrading Hyphomicrobium sp strain MC1, Journal of Bacteriology | 2011
  Auteur·e·s : Stéphane Vuilleumier - Thierry Nadalig - Muhammad Farhan Ul Haque - Ghislaine Magdelenat - Aurelie Lajus - Sandro Roselli - Emilie Muller - Christelle Gruffaz - Valerie Barbe - Claudine Medigue - Françoise Bringel
• Correction of the consequences of mitochondrial 3243A>G mutation in the MT-TL1 gene causing the MELAS syndrome by tRNA import into mitochondria, Nucleic Acids Research | 2011
  Auteur·e·s : O Karicheva - O Kolesnikova - T Schirtz - M Vysokikh - Anne-Marie Mager-Heckel - A Lombes - A Boucheham - I Krasheninnikov - R Martin - Nina Entelis - Ivan Tarassov
• Detection and isolation of chloromethane-degrading bacteria from the Arabidopsis thaliana phyllosphere, and characterization of chloromethane utilization genes, FEMS Microbiology Ecology | 2011
  Auteur·e·s : Thierry Nadalig - Muhammad Farhan Ul Haque - Sandro Roselli - Hubert Schaller - Françoise Bringel - Stéphane Vuilleumier
• Dichloromethane-degrading bacteria in the genomic age, Research in Microbiology | 2011
  Auteur·e·s : Emilie Muller - Françoise Bringel - Stéphane Vuilleumier
• Facultative methanotrophy: false leads, true results, and suggestions for future research, FEMS Microbiology Letters | 2011
  Auteur·e·s : Jeremy Semrau - Alan DiSpirito - Stéphane Vuilleumier
• Functional genomics of dichloromethane utilization in Methylobacterium extorquens DM4, Environmental Microbiology | 2011
  Auteur·e·s : Emilie Muller - Edith Hourcade - Yousra Louhichi-Jelail - Philippe Hammann - Stéphane Vuilleumier - Françoise Bringel
• Genome sequence of Methyloversatilis universalis FAM5 T , a methylotrophic representative of the order Rhodocyclales, Journal of Bacteriology | 2011
  Auteur·e·s : Weerayuth Kittichotirat - Nathan Good - Rob Hall - Françoise Bringel - Aurelie Lajus - Claudine Medigue - Nicole Smalley - David Beck - Roger Bumgarner - Stéphane Vuilleumier - Marina Kalyuzhnaya
• Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96, Journal of Bacteriology | 2011
  Auteur·e·s : Mette Svenning - Anne Hestnes - Ingvild Wartiainen - Lisa Stein - Martin Klotz - Marina Kalyuzhnaya - Anja Spang - Françoise Bringel - StÉphane Vuilleumier - Aurelie Lajus - Claudine Medigue - David Bruce - Jan-Fang Cheng - Lynne Goodwin - Natalia Ivanova - James Han - Cliff Han - Loren Hauser - Brittany Held - Miriam Land - Alla Lapidus - Susan Lucas - Matt Nolan - Sam Pitluck - Tanja Woyke
• Genome sequence of the methanotrophic Alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242), Journal of Bacteriology | 2011
  Auteur·e·s : Lisa Stein - Françoise Bringel - Alan DiSpirito - Sukkyun Han - Mike Jetten - Marina Kalyuzhnaya - K Kits - Martin Klotz - Huub den Camp - Jeremy Semrau - Stéphane Vuilleumier - David Bruce - Jan-Fang Cheng - Karen Davenport - Lynne Goodwin - Shunsheng Han - Loren Hauser - Aurelie Lajus - Miriam Land - Alla Lapidus - Susan Lucas - Claudine Medigue - Sam Pitluck - Tanja Woyke
• Herbicide degradation and copper complexation by bacterial mixed cultures from a vineyard stormwater basin, Journal of Soils and Sediments | 2011
  Auteur·e·s : Paul Bois - David Huguenot - Marie-Paule Norini - Muhammad Farhan Ul Haque - Stéphane Vuilleumier - Thierry Lebeau
• Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics, ISME Journal | 2011
  Auteur·e·s : Philippe Bertin - Audrey Heinrich-Salmeron - Eric Pelletier - Florence Goulhen-Chollet - Florence Arsène-Ploetze - Sébastien Gallien - Béatrice Lauga - Corinne Casiot - Alexandra Calteau - David Vallenet - Violaine Bonnefoy - Odile Bruneel - Béatrice Chane-Woon-Ming - Jessica Cleiss-Arnold - Robert Duran - Françoise Elbaz-Poulichet - Nuria Fonknechten - Ludovic Giloteaux - David Halter - Sandrine Koechler - Marie Marchal - Damien Mornico - Christine Schaeffer - Adam Smith - Alain Van Dorsselaer - Jean Weissenbach - Claudine Médigue - Denis Le Paslier
• Ploidy influences cellular responses to gross chromosomal rearrangements in Saccharomyces cerevisiae, BMC Genomics | 2011
  Auteur·e·s : P Jung - E Fritsch - C Blugeon - J Souciet - Serge Potier - S Lemoine - Joseph Schacherer - Jacky de Montigny
• Pseudomonas protegens sp. nov.., widespread plant-protecting bacteria producing the biocontrol compounds 2,4-diacetylphloroglucinol and pyoluteorin, Systematic and Applied Microbiology | 2011
  Auteur·e·s : Alban Ramette - Michele Frapolli - Marion Fischer-Le Saux - Christelle Gruffaz - Jean-Marie Meyer - Genevieve Defago - Laurent Sutra - Yvan Moenne-Loccoz
• Single molecule tracking fluorescence microscopy in mitochondria reveals highly dynamic but confined movement of Tom40, Scientific Reports | 2011
  Auteur·e·s : A Kuzmenko - S Tankov - B English - Ivan Tarassov - T Tenson - P Kamenski - J Elf - V Hauryliuk
• Subinhibitory arsenite concentrations lead to population dispersal in Thiomonas sp, PLoS ONE | 2011
  Auteur·e·s : Marie Marchal - Romain Briandet - David Halter - Sandrine Koechler - Michael DuBow - Marie-Claire Lett - Philippe Bertin
• Taxonomic and functional prokaryote diversity in mildly arsenic-contaminated sediments, Research in Microbiology | 2011
  Auteur·e·s : David Halter - Audrey Cordi - Simonetta Gribaldo - Sébastien Gallien - Florence Goulhen-Chollet - Audrey Heinrich-Salmeron - Christine Carapito - Christophe Pagnout - Didier Montaut - Fabienne Seby - Alain Van Dorsselaer - Christine Schaeffer - Philippe Bertin - Pascale Bauda - Florence Arsène-Ploetze
• The Saccharomyces cerevisiae flavodoxin-like proteins Ycp4 and Rfs1 play a role in stress response and in the regulation of genes related to metabolism, Archives of Microbiology | 2011
  Auteur·e·s : F Cardona - H Orozco - Sylvie Friant - A Aranda - Ml del Olmo
• The Ty1 LTR-retrotransposon population in Saccharomyces cerevisiae genome: dynamics and sequence variations during mobility., FEMS yeast research | 2011
  Auteur·e·s : Claudine Bleykasten-Grosshans - Paul Jung - Emilie S Fritsch - Serge Potier - Jacky De Montigny - Jean-Luc Souciet
• The rise of yeast population genomics, Comptes rendus. Biologies | 2011
  Auteur·e·s : G Liti - Joseph Schacherer
• Transposable elements in yeasts, Comptes rendus. Biologies | 2011
  Auteur·e·s : Claudine Bleykasten-Grosshans - C Neuveglise
• Unsuspected diversity of arsenite-oxidizing bacteria as revealed by widespread distribution of the aoxB Gene in prokaryotes, Applied and Environmental Microbiology | 2011
  Auteur·e·s : A Heinrich-Salmeron - A Cordi - C Brochier-Armanet - D Halter - C Pagnout - E Abbaszadeh-Fard - D Montaut - F Seby - Philippe Bertin - P Bauda - Florence Arsène-Ploetze
• Complete mitochondrial genome sequence of the yeast Pichia farinosa and comparative analysis of closely related species., Current genetics | 2010
  Auteur·e·s : Paul Jung - Anne Friedrich - Jean-Luc Souciet - Veronique Louis - Serge Potier - Jacky De Montigny - Joseph Schacherer
• Coupling of denaturing high-performance liquid chromatography and terminal restriction fragment length polymorphism with precise fragment sizing for microbial community profiling and characterization, Applied and Environmental Microbiology | 2010
  Auteur·e·s : Christian Penny - Thierry Nadalig - Malek Alioua - Christelle Gruffaz - Stéphane Vuilleumier - Françoise Bringel
• Expanding importance of mRNA expression in understanding stress and stress responses, Journal of Theoretical Biology | 2010
  Auteur·e·s : Ivan Couée - Françoise Bringel
• Genome Sequence of the Obligate Methanotroph Methylosinus trichosporium Strain OB3b, Journal of Bacteriology | 2010
  Auteur·e·s : Lisa Stein - Sukhwan Yoon - Jeremy Semrau - Alan Dispirito - Andrew Crombie - J Murrell - Stéphane Vuilleumier - Marina Kalyuzhnaya - Huub Op Den Camp - Françoise Bringel - D Bruce - J.-F. Cheng - A Copeland - Lynne Goodwin - Shunsheng Han - Loren Hauser - Mike Jetten - Aurélie Lajus - M Land - A Lapidus - S Lucas - Claudine Médigue - S Pitluck - Tanja Woyke - Ahmet Zeytun - Martin Klotz
• Microbial degradation of tetrachloromethane: mechanisms and perspectives for bioremediation, FEMS Microbiology Ecology | 2010
  Auteur·e·s : Christian Penny - Stéphane Vuilleumier - Françoise Bringel
• Selection of RNA aptamers imported into yeast and human mitochondria, RNA | 2010
  Auteur·e·s : Olga Kolesnikova - Helena Kazakova - Caroline Comte - Sergey Steinberg - Piotr Kamenski - Robert P. Martin - Ivan Tarassov - Nina Entelis
• tRNA mitochondrial import in yeast: Mapping of the import determinants in the carrier protein, the precursor of mitochondrial lysyl-tRNA synthetase, Mitochondrion | 2010
  Auteur·e·s : Piotr Kamenski - Ekaterina Smirnova - Olga Kolesnikova - Igor A. Krasheninnikov - Robert P. Martin - Nina Entelis - Ivan Tarassov
• Acute Infantile Liver Failure Due to Mutations in the TRMU Gene, American Journal of Human Genetics | 2009
  Auteur·e·s : Avraham Zeharia - Avraham Shaag - Orit Pappo - Anne-Marie Mager-Heckel - Ann Saada - Marine Beinat - Olga Karicheva - Hanna Mandel - Noa Ofek - Reeval Segel - Daphna Marom - Agnes Rötig - Ivan Tarassov - Orly Elpeleg
• Carbon and arsenic metabolism in Thiomonas strains: differences revealed diverse adaptation processes, BMC Microbiology | 2009
  Auteur·e·s : Bryan - Christopher G. Bryan - Marie Marchal - Fabienne Battaglia-Brunet - Valérie Kugler - Christelle Lemaitre-Guillier - Didier Lievremont - Philippe Bertin - Florence Arsène-Ploetze
• Comparative genomics of protoploid Saccharomycetaceae., Genome research | 2009
  Auteur·e·s : Jean-Luc Souciet - Bernard Dujon - Claude Gaillardin - Mark Johnston - Philippe V Baret - Paul Cliften - David J Sherman - Jean Weissenbach - Eric Westhof - Patrick Wincker - Claire Jubin - Julie Poulain - Valérie Barbe - Béatrice Ségurens - François Artiguenave - Véronique Anthouard - Benoit Vacherie - Marie-Eve Val - Robert S Fulton - Patrick Minx - Richard Wilson - Pascal Durrens - Géraldine Jean - Christian Marck - Tiphaine Martin - Macha Nikolski - Thomas Rolland - Marie-Line Seret - Serge Casarégola - Laurence Despons - Cécile Fairhead - Gilles Fischer - Ingrid Lafontaine - Veronique Leh - Marc Lemaire - Jacky De Montigny - Cécile Neuvéglise - Agnès Thierry - Isabelle Blanc-Lenfle - Claudine Bleykasten-Grosshans - Julie Diffels - Emilie Fritsch - Lionel Frangeul - Adrien Goëffon - Nicolas Jauniaux - Rym Kachouri-Lafond - Célia Payen - Serge Potier - Lenka Pribylova - Christophe Ozanne - Guy-Franck Richard - Christine Sacerdot - Marie-Laure Straub - Emmanuel Talla - - Génolevures Consortium
• FpvA bound to non-cognate pyoverdines: molecular basis of siderophore recognition by an iron transporter, Molecular Microbiology | 2009
  Auteur·e·s : Jason Greenwald - Mirella Nader - Hervé Celia - Christelle Gruffaz - Valérie Geoffroy - Jean-Marie Meyer - Isabelle Schalk - Franc Pattus
• Influence of genetic background on the occurrence of chromosomal rearrangements in Saccharomyces cerevisiae., BMC genomics | 2009
  Auteur·e·s : Emilie S Fritsch - Joseph Schacherer - Claudine Bleykasten-Grosshans - Jean-Luc Souciet - Serge Potier - Jacky De Montigny
• Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources, PLoS ONE | 2009
  Auteur·e·s : Stéphane Vuilleumier - Ludmila Chistoserdova - Ming-Chun Lee - Françoise Bringel - Aurélie Lajus - Yang Zhou - Benjamin Gourion - Valérie Barbe - Jean Chang - Stéphane Cruveiller - Carole Dossat - Will Gillett - Christelle Gruffaz - Eric Haugen - Edith Hourcade - Ruth Levy - Sophie Mangenot - Emilie Muller - Thierry Nadalig - Marco Pagni - Christian Penny - Rémi Peyraud - David Robinson - David Roche - Zoé Rouy - Channakhone Saenampechek - Grégory Salvignol - David Vallenet - Zaining Wu - Christopher Marx - Julia Vorholt - Maynard Olson - Rajinder Kaul - Jean Weissenbach - Claudine Médigue - Mary Lidstrom
• On the role of an unusual tRNAGly isoacceptor in Staphylococcus aureus, Biochimie | 2009
  Auteur·e·s : Stamatina Giannouli - Athanasios Kyritsis - Nikolaos Malissovas - Hubert Becker - Constantinos Stathopoulos
• The complete mitochondrial genome of the yeast Pichia sorbitophila., FEMS yeast research | 2009
  Auteur·e·s : Paul Jung - Joseph Schacherer - Jean-Luc Souciet - Serge Potier - Patrick Wincker - Jacky De Montigny
• Uracil salvage is necessary for early Arabidopsis development, Plant Journal | 2009
  Auteur·e·s : Samuel Mainguet - Bertrand Gakière - Amel Majira - Sandra Pelletier - Françoise Bringel - Florence Guérard - Michel Caboche - Richard Berthomé - Jean Renou
• Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes., Nucleic acids research | 2008
  Auteur·e·s : David J Sherman - Tiphaine Martin - Macha Nikolski - Cyril Cayla - Jean-Luc Souciet - Pascal Durrens - - Génolevures Consortium - C Marck - E Talla - M Lemaire - J Weissenbach - D Sherman - C Gaillardin - B Dujon - Serge Potier - Jean-Luc Souciet - M Johnston - R Fulton - L Frangeul - P Baret - Eric Westhof
• Lactobacillus plantarum response to inorganic carbon concentrations: PyrR2-dependent and -independent transcription regulation of genes involved in arginine and nucleotide metabolism, Microbiology | 2008
  Auteur·e·s : Françoise Bringel - Philippe Hammann - Valérie Kugler - Florence Arsène-Ploetze
• Low carbamoyl phosphate pools may drive Lactobacillus plantarum CO2-dependent growth phenotype, Journal of Molecular Microbiology and Biotechnology | 2008
  Auteur·e·s : Françoise Bringel - Stéphane Vuilleumier - Florence Arsène-Ploetze
• Deleterious Mutation in the Mitochondrial Arginyl–Transfer RNA Synthetase Gene Is Associated with Pontocerebellar Hypoplasia, American Journal of Human Genetics | 2007
  Auteur·e·s : Simon Edvardson - Avraham Shaag - Olga Kolesnikova - John Moshe Gomori - Ivan Tarassov - Tom Einbinder - Ann Saada - Orly Elpeleg
• Evidence for an Adaptation Mechanism of Mitochondrial Translation via tRNA Import from the Cytosol, Molecular Cell | 2007
  Auteur·e·s : Piotr Kamenski - Olga Kolesnikova Karchenkov - Vanessa Jubenot - Nina Entelis - Igor A. Krasheninnikov - Robert P. Martin - Ivan Tarassov
• Import of Nuclear DNA-Encoded RNAs into Mitochondria and Mitochondrial Translation, Cell Cycle | 2007
  Auteur·e·s : Ivan Tarassov - Piotr Kamenski - Olga Kolesnikova - Olga Karicheva - Robert P. Martin - Igor A. Krasheninnikov - Nina Entelis
• Spontaneous deletions and reciprocal translocations in Saccharomyces cerevisiae: influence of ploidy., Molecular microbiology | 2007
  Auteur·e·s : Yves Tourrette - Joseph Schacherer - Emilie Fritsch - Serge Potier - Jean-Luc Souciet - Jacky De Montigny
• Spontaneous duplications in diploid Saccharomyces cerevisiae cells., DNA repair | 2007
  Auteur·e·s : Joseph Schacherer - Yves Tourrette - Serge Potier - Jean-Luc Souciet - Jacky De Montigny
• The Transamidosome: A Dynamic Ribonucleoprotein Particle Dedicated to Prokaryotic tRNA-Dependent Asparagine Biosynthesis, Molecular Cell | 2007
  Auteur·e·s : Marc Bailly - Mickaël Blaise - Bernard Lorber - Hubert Becker - Daniel Kern
• tRNA import into yeast mitochondria is regulated by the ubiquitin-proteasome system, FEBS Letters | 2007
  Auteur·e·s : Irina Brandina - Alexandre Smirnov - Olga Kolesnikova - Nina Entelis - Igor A. Krasheninnikov - Robert P. Martin - Ivan Tarassov
• A glycolytic enzyme, enolase, is recruited as a cofactor of tRNA targeting toward mitochondria in Saccharomyces cerevisiae, Genes and Development | 2006
  Auteur·e·s : Nina Entelis - Irina Brandina - Piotr Kamenski - Igor A. Krasheninnikov - Robert Martin - Ivan Tarassov
• An evolutionary scenario for one of the largest yeast gene families., Trends in genetics : TIG | 2006
  Auteur·e·s : Laurence Despons - Bénédicte Wirth - Veronique Leh Louis - Serge Potier - Jean-Luc Souciet
• Enolase takes part in a macromolecular complex associated to mitochondria in yeast, BBA - Bioenergetics | 2006
  Auteur·e·s : Irina Brandina - James Graham - Christelle Lemaitre-Guillier - Nina Entelis - Igor Krasheninnikov - Lee Sweetlove - Ivan Tarassov - Robert P. Martin
• Strain typing with ISLpl1 in lactobacilli, Microbiology Letters | 2006
  Auteur·e·s : Tanja Petrovic - Miomir Niksic - Françoise Bringel
• Uracil salvage pathway in Lactobacillus plantarum | 2006
  Auteur·e·s : Florence Arsène-Ploetze - Hervé Nicoloff - Benoit Kammerer - Jan Martinussen - Françoise Bringel
• Duplication processes in Saccharomyces cerevisiae haploid strains., Nucleic acids research | 2005
  Auteur·e·s : Joseph Schacherer - Jacky De Montigny - Anne Welcker - Jean-Luc Souciet - Serge Potier
• Exploring Lactobacillus plantarum genome diversity by using microarrays, Journal of Bacteriology | 2005
  Auteur·e·s : Douwe Molenaar - Françoise Bringel - Frank Schuren - Willem De Vos - Roland Siezen - Michiel Kleerebezem
• Lactobacillus plantarum subsp. argentoratensis subsp. nov., isolated from vegetable matrices, International Journal of Systematic and Evolutionary Microbiology | 2005
  Auteur·e·s : Françoise Bringel - Anna Castioni - Daniel Olukoya - Giovanna Felis - Sandra Torriani - Franco Dellaglio
• Repression of the pyr operon in Lactobacillus plantarum prevents its ability to grow at low carbon dioxide levels, Journal of Bacteriology | 2005
  Auteur·e·s : Hervé Nicoloff - Aram Elagöz - Florence Arsène-Ploetze - Benoît Kammerer - Jan Martinussen - Françoise Bringel
• SH3 domain-containing proteins and the actin cytoskeleton in yeast, Biochemical Society Transactions | 2005
  Auteur·e·s : Gladys Mirey - Alexandre Soulard - Clélia Orange - Sylvie Friant - Barbara Winsor
• The WASP/Las17p-interacting protein Bzz1p functions with Myo5p in an early stage of endocytosis, Protoplasma | 2005
  Auteur·e·s : Alexandre Soulard - Sylvie Friant - C. Fitterer - C. Orange - G. Kaneva - G. Mirey - Barbara Winsor
• Two arginine repressors regulate arginine biosynthesis in Lactobacillus plantarum, Journal of Bacteriology | 2004
  Auteur·e·s : Hervé Nicoloff - Florence Arsène-Ploetze - Cédric Malandain - Michiel Kleerebezem - Françoise Bringel
• Extent of genetic lesions of the arginine and pyrimidine biosynthetic pathways in Lactobacillus plantarum, L. paraplantarum, L. pentosus, and L. casei: prevalence of CO(2)-dependent auxotrophs and characterization of deficient arg genes in L. plantarum, Applied and Environmental Microbiology | 2003
  Auteur·e·s : Françoise Bringel - Jean-Claude Hubert
• ISLpl1 is a functional IS30-related insertion element in Lactobacillus plantarum that is also found in other lactic acid bacteria, Applied and Environmental Microbiology | 2003
  Auteur·e·s : Hervé Nicoloff - Françoise Bringel
• Recherche d'orthologues d'ArgR/AhrC dans le génome de bactéries à Gram positif, Sciences des Aliments | 2002
  Auteur·e·s : Françoise Bringel - Hervé Nicoloff - Florence Arsène-Ploetze - Jean-Claude Hubert
• Interactions between Ty1 Retrotransposon RNA and the T and D Regions of the tRNAi Met Primer Are Required for Initiation of Reverse Transcription In Vivo, Molecular and Cellular Biology | 1998
  Auteur·e·s : Sylvie Friant - T. Heyman - A. S. Byström - M. Wilhelm - F. X. Wilhelm
• Heterogeneous terminal structure of Ty1 and Ty3 reverse transcripts, Nucleic Acids Research | 1997
  Auteur·e·s : Marcelle Wilhelm - Thérèse Heyman - Sylvie Friant - François-Xavier Wilhelm
• Role of RNA primers in initiation of minus-strand and plus-strand DNA synthesis of the yeast retrotransposon Ty1, Biochimie | 1996
  Auteur·e·s : Sylvie Friant - T Heyman - FX Wilhelm - M Wilhelm
• Plus-strand DNA Synthesis of the Yeast Retrotransposon Ty1 is Initiated at Two Sites, PPT1 Next to the 3′ LTR and PPT2 Within thepolGene. PPT1 is Sufficient for Ty1 Transposition, Journal of Molecular Biology | 1995
  Auteur·e·s : T. Heyman - B. Agoutin - Sylvie Friant - F.X. Wilhelm - M.L. Wilhelm

Livres et monographies

• Ribozymes, Ribozymes | 2021
  Auteur·e·s : Sabine Müller - Benoit Masquida - W Winkler
• Sustainability Research in the Upper Rhine Region. Concepts and Case Studies | 2019
  Auteur·e·s : Philippe Hamman - Stéphane Vuilleumier

Parties d'ouvrages

• Lipophilic Conjugates for Carrier-Free Delivery of RNA Importable into Human Mitochondria, Mitochondrial Medicine. Volume 3: Manipulating Mitochondria and Disease- Specific Approaches | 2021
  Auteur·e·s : Ilya Dovydenko - Mariya Meschaninova - Anne-Marie Heckel - Ivan Tarassov - Alya Venyaminova - Nina Entelis
• Strategies for Crystallization of Natural Ribozymes, Ribozymes | 2021
  Auteur·e·s : Benoit Masquida - Diana Sibrikova - Maria Costa
• Suborganellar Localization of Mitochondrial Proteins and Transcripts in Human Cells, Methods in Molecular Biology | 2021
  Auteur·e·s : Anna Smirnova - Ludovic Richert - Alexander Smirnov - Yves Mely - Ivan Tarassov
• The Lariat Capping Ribozyme, Ribozymes | 2021
  Auteur·e·s : Henrik Nielsen - Nicolai Krogh - Benoit Masquida - Steinar Johansen
• Visualizing mitochondrial importability of a protein using the yeast Bi-genomic Mitochondrial-Split-GFP strain and an ordinary fluorescence microscope, Methods in Molecular Biology | 2021
  Auteur·e·s : Marine Hemmerle - Bruno Senger - Roza Kucharczyk - Hubert Becker
• Non-canonical inputs and outputs of tRNA aminoacylation. The Enzymes:Biology of Aminoacyl-tRNA Synthetases, The Enzymes: Biology of Aminoacyl-tRNA Synthetases | 2020
  Auteur·e·s : Marine Hemmerle - Marion Wendenbaum - Guillaume Grob - Nathaniel Yakobov - Nassira Mahmoudi-kaidi - Bruno Senger - Sylvain Debard - Hubert Becker
• Introduction – Sustainability Research in the Upper Rhine Region. Concepts and Case Studies, Sustainability Research in the Upper Rhine Region. Concepts and Case Studies | 2019
  Auteur·e·s : Philippe Hamman - Stéphane Vuilleumier
• Microbiological energy valorisation of grape marc, Innovations for sustainable biomass utilisation in the Upper Rhine region | 2017
  Auteur·e·s : Stéphane Vuilleumier - Muhammad Farhan Ul Haque - C Gruffaz - L Besaury
• The Phyllosphere as a habitat for microbial trace gas consumers, The impact of microorganisms on consumption of atmospheric trace gases | 2017
  Auteur·e·s : Françoise Bringel - Ivan Couée
• Polyacrylamide Gel Electrophoresis for Purification of Large Amounts of RNA, Methods in Molecular Biology | 2016
  Auteur·e·s : Melanie Meyer - Benoit Masquida
• Structure et fonctionnement des écosystèmes microbiens : métagénomique et intégration des omiques, La génomique environnementale. La révolution du séquençage à haut débit | 2016
  Auteur·e·s : Philippe Bertin - Télesphore Sime-Ngando - Didier Debroas - Laurence Garczarek - Denis Le Paslier - Roland Marmeisse - Sébastien Monchy - Frederic Plewniak
• Les microbiomes de la phyllosphère, La métagénomique : Développements actuels et futures applications | 2015
  Auteur·e·s : Françoise Bringel - Ivan Couée
• cis-Acting 5' hammerhead ribozyme optimization for in vitro transcription of highly structured RNAs, RNA Folding. Methods and Protocols | 2014
  Auteur·e·s : Mélanie Meyer - Benoit Masquida
• Mitochondrial targeting of RNA and mitochondrial translation, Translation in Mitochondria and Other Organelles | 2013
  Auteur·e·s : Ivan Tarassov - Ivan Chicherin - Yann Tonin - Alexander Smirnov - Petr Kamenski - Nina Entelis
• Proteomics as a Tool for the Characterization of Microbial Isolates and Complex Communities, Proteomic Applications in Biology | 2012
  Auteur·e·s : Florence Arsène-Ploetze - Christine Carapito - Frederic Plewniak - Philippe Bertin
• Bacterial tolerance in contaminated soils: potential of the PICT approach in microbial ecology, Tolerance to Environmental Contaminants | 2011
  Auteur·e·s : Gwenaël Imfeld - Françoise Bringel - Stéphane Vuilleumier