Useful links

Mitochondria:

 

Mitochondrial research society: http://www.mitoresearch.org/

 

Mitomap database: http://www.mitomap.org/MITOMAP

 

GO base for organellar genomes: http://gobase.bcm.umontreal.ca/

 

Human mitochondrial genome database: http://www.genpat.uu.se/mtDB/

 

 

 

Genomes:

 

Genolevures database: http://www.genolevures.org/

 

SGD (yeast genome database): http://www.yeastgenome.org/

 

Codon usage database: http://www.kazusa.or.jp/codon/

 

 

Tools:

 

BLAST: http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastSearch&PROG_DEF=blastn&BLAST_PROG_DEF=megaBlast&BLAST_SPEC=blast2seq

 

 

Sequence & structure analyses:

 

RNA modification database: http://modomics.genesilico.pl/

 

tRNA analysis interface: http://biochem.ncsu.edu/RNAmods/trnabase/

 

Oligonucleotide properties calculator: http://www.basic.northwestern.edu/biotools/oligocalc.html

 

PSORT localisation predictor: http://psort.ims.u-tokyo.ac.jp/

 

Protein 3D structure PYRE predictor: http://www.sbg.bio.ic.ac.uk/phyre/html/index.html

 

RNA 2D structure predictor: http://rna.tbi.univie.ac.at/cgi-bin/RNAfold.cgi

 

Mfold RNA 2D structure predictor: http://mobyle.pasteur.fr/cgi-bin/portal.py?form=mfold

 

RNA & Oligonucleotide structure predictor: http://sfold.wadsworth.org/index.pl